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Saccharomyces cerevisiae

Cyclebase periodic rank: 1,504



Analysis Results

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Combined Analysis (all experiments)

P(per)
= 0.0953
P(reg)
= 8.438E-4
Peaktime
uncertain [see possible reasons why]

Combined Peaktime

Peaktime Chart
* Y-axis rescaled to remove outlier(s)
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Experiments


Orthologs and Paralogs:

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Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info SOL3 [YHR163W] Saccharomyces cerevisiae 1,776 uncertain 9.5E-4 0.246
Click to View Chart Preview Click for Info At1g13700 Arabidopsis thaliana 2,385 uncertain 0.322 0.017
Click to View Chart Preview Click for Info SPCC16C4.10 Schizosaccharomyces pombe 2,879 uncertain 4.07E-4 4.283
Click to View Chart Preview Click for Info SOL2 [YCR073W-A] Saccharomyces cerevisiae 3,328 uncertain 0.06 1.069
Click to View Chart Preview Click for Info At3g49360 Arabidopsis thaliana 3,841 uncertain 0.477 0.076
Click to View Chart Preview Click for Info TAPBP [ENSG00000112493] Homo sapiens 4,124 uncertain 0.569 0.014
Click to View Chart Preview Click for Info LRRC27 [ENSG00000148814] Homo sapiens 4,125 uncertain 0.569 0.014
Click to View Chart Preview Click for Info SISd [ENSG00000161570] Homo sapiens 4,126 uncertain 0.569 0.014
Click to View Chart Preview Click for Info TML1 [ENSG00000187621] Homo sapiens 4,127 uncertain 0.569 0.014
Click to View Chart Preview Click for Info LOH12CR2 [ENSG00000205791] Homo sapiens 4,128 uncertain 0.569 0.014
Click to View Chart Preview Click for Info SOL1 [YNR034W] Saccharomyces cerevisiae 4,908 uncertain 14.99 0.377
Click to View Chart Preview Click for Info 6PGL [ENSG00000130313] Homo sapiens 5,649 uncertain 1.818 0.015
Click to View Chart Preview Click for Info At5g24410 Arabidopsis thaliana 6,036 uncertain 0.889 0.091
Click to View Chart Preview Click for Info At5g24420 Arabidopsis thaliana 7,121 uncertain 0.319 0.581
Click to View Chart Preview Click for Info EMB2024 [AT5G24400] Arabidopsis thaliana 12,709 uncertain 0.393 2.433

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

Click for more information

Graph of SOL4 (from probeset YGR248W).

Click to enlarge