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Saccharomyces cerevisiae

Cyclebase periodic rank: 5,968



Gene Features:

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Degradation Signals:
  1. KENbox
  2. PEST

Analysis Results

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Combined Analysis (all experiments)

P(per)
= 102.6
P(reg)
= 3.32
Peaktime
uncertain [see possible reasons why]

Combined Peaktime

Peaktime Chart
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Experiments


Orthologs and Paralogs:

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Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info brf1 [SPBC13E7.10c] Schizosaccharomyces pombe 3,536 uncertain 10.585 0.061
Click to View Chart Preview Click for Info At2g01280 Arabidopsis thaliana 3,793 uncertain 1.207 6.13E-4
Click to View Chart Preview Click for Info At2g45100 Arabidopsis thaliana 8,780 uncertain 0.241 1.324
Click to View Chart Preview Click for Info BRF2 [ENSG00000104221] Homo sapiens 14,123 uncertain 23.32 2.221
Click to View Chart Preview Click for Info F3L24.23 [AT3G09360] Arabidopsis thaliana 19,731 uncertain 2.062 2.335
Click to View Chart Preview Click for Info AT4g35540 Arabidopsis thaliana 20,392 uncertain 2.542 2.274

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

Click for more information

Graph of BRF1 (from probeset YGR246C).

Click to enlarge