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Saccharomyces cerevisiae

Cyclebase periodic rank: 3,808



Analysis Results

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Combined Analysis (all experiments)

P(per)
= 11.29
P(reg)
= 0.022
Peaktime
uncertain [see possible reasons why]

Combined Peaktime

Peaktime Chart
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Experiments


Orthologs and Paralogs:

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Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info slp1 [SPAC821.08c] Schizosaccharomyces pombe 2 G2/M 1.81E-50 2.95E-22
Periodic
Click to View Chart Preview Click for Info CDC20 [ENSG00000117399] Homo sapiens 24 M 5.18E-17 7.65E-9
Periodic
Click to View Chart Preview Click for Info srw1 [SPAC144.13c] Schizosaccharomyces pombe 68 M 2.71E-36 1.42E-13
Periodic
Click to View Chart Preview Click for Info CDC20 [YGL116W] Saccharomyces cerevisiae 96 G2/M 3.91E-18 4.35E-7
Periodic
Click to View Chart Preview Click for Info FZR1 [ENSG00000105325] Homo sapiens 115 G2 1.8E-12 0.003
Periodic
Click to View Chart Preview Click for Info At5g13840 Arabidopsis thaliana 594 uncertain 0.045 0.009
Click to View Chart Preview Click for Info CDH1 [YGL003C] Saccharomyces cerevisiae 1,982 uncertain 1.81E-5 2.474
Click to View Chart Preview Click for Info mfr1 [SPBC1198.12] Schizosaccharomyces pombe 2,705 uncertain 0.502 0.031
Click to View Chart Preview Click for Info mfr2 [SPCC1620.04c] Schizosaccharomyces pombe 3,670 uncertain 436.916 4.25E-6
Click to View Chart Preview Click for Info SPAC13G6.08 Schizosaccharomyces pombe 4,431 uncertain 6942.773 7.44E-4
Click to View Chart Preview Click for Info CDC20.3 [AT5G27080] Arabidopsis thaliana 5,879 uncertain 0.406 0.291
Click to View Chart Preview Click for Info F7H19.90 [AT4G22910] Arabidopsis thaliana 9,264 uncertain 3.068 0.018
Click to View Chart Preview Click for Info WPP3 [AT5G27940] Arabidopsis thaliana 9,817 uncertain 0.337 1.19
Click to View Chart Preview Click for Info At4g11920 Arabidopsis thaliana 11,761 uncertain 0.789 0.784
Click to View Chart Preview Click for Info At5g27570 Arabidopsis thaliana 12,080 uncertain 2.393 0.213

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

Click for more information

Graph of AMA1 (from probeset YGR225W).

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