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Saccharomyces cerevisiae

Cyclebase periodic rank: 2,300



Gene Features:

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Degradation Signals:
  1. PEST

Analysis Results

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Combined Analysis (all experiments)

P(per)
= 8.046E-4
P(reg)
= 1.818
Peaktime
uncertain [see possible reasons why]

Combined Peaktime

Peaktime Chart
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Experiments


Orthologs and Paralogs:

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Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info SPAP7G5.06 Schizosaccharomyces pombe 241 G2 5.04E-17 2.41E-7
Periodic
Click to View Chart Preview Click for Info put4 [SPAC869.10c] Schizosaccharomyces pombe 248 G1/S 2.15E-17 1.93E-6
Periodic
Click to View Chart Preview Click for Info SPBPB2B2.01 Schizosaccharomyces pombe 256 S/G2 4.95E-11 2.77E-12
Periodic
Click to View Chart Preview Click for Info SPCPB1C11.02 Schizosaccharomyces pombe 273 uncertain 1.14E-9 6.39E-13
Periodic
Click to View Chart Preview Click for Info SPBC359.03c Schizosaccharomyces pombe 336 G2 2.8E-14 1.46E-5
Periodic
Click to View Chart Preview Click for Info DIP5 [YPL265W] Saccharomyces cerevisiae 531 uncertain 2.76E-4 1.41E-6
Periodic
Click to View Chart Preview Click for Info SPBC359.01 Schizosaccharomyces pombe 597 uncertain 6.86E-12 0.003
Click to View Chart Preview Click for Info At1g58030 Arabidopsis thaliana 932 uncertain 0.059 0.051
Click to View Chart Preview Click for Info TAT1 [YBR069C] Saccharomyces cerevisiae 939 uncertain 0.008 2.71E-4
Click to View Chart Preview Click for Info At2g34960 Arabidopsis thaliana 1,353 uncertain 0.192 0.002
Click to View Chart Preview Click for Info SPAC869.11 [SPAC922.08c] Schizosaccharomyces pombe 1,481 uncertain 0.003 0.004
Click to View Chart Preview Click for Info SAM3 [YPL274W] Saccharomyces cerevisiae 1,528 uncertain 0.165 3.36E-4
Click to View Chart Preview Click for Info GAP1 [YKR039W] Saccharomyces cerevisiae 1,617 uncertain 22.6 4.16E-10
Click to View Chart Preview Click for Info BAP2 [YBR068C] Saccharomyces cerevisiae 1,720 uncertain 0.326 3.64E-4
Click to View Chart Preview Click for Info AGP1 [YCL025C] Saccharomyces cerevisiae 1,829 uncertain 1.171 3.09E-5
Click to View Chart Preview Click for Info MMP1 [YLL061W] Saccharomyces cerevisiae 1,987 uncertain 1.248 1.48E-4
Click to View Chart Preview Click for Info SLC7A2 [ENSG00000003989] Homo sapiens 2,107 uncertain 0.165 0.004
Click to View Chart Preview Click for Info TAT2 [YOL020W] Saccharomyces cerevisiae 2,480 uncertain 0.003 1.267
Click to View Chart Preview Click for Info PUT4 [YOR348C] Saccharomyces cerevisiae 2,504 uncertain 3.809 8.56E-4
Click to View Chart Preview Click for Info LYP1 [YNL268W] Saccharomyces cerevisiae 2,554 uncertain 0.005 0.972
Click to View Chart Preview Click for Info ALP1 [YNL270C] Saccharomyces cerevisiae 2,831 uncertain 19.54 3.15E-4
Click to View Chart Preview Click for Info BAP3 [YDR046C] Saccharomyces cerevisiae 3,067 uncertain 15.91 0.002
Click to View Chart Preview Click for Info F18K10.21 [AT3G10600] Arabidopsis thaliana 3,214 uncertain 0.582 0.01
Click to View Chart Preview Click for Info GNP1 [YDR508C] Saccharomyces cerevisiae 3,286 uncertain 2.744 0.021
Click to View Chart Preview Click for Info SPCC777.04 Schizosaccharomyces pombe 3,612 uncertain 8.62 0.251
Click to View Chart Preview Click for Info meu22 [SPBC19F8.06c] Schizosaccharomyces pombe 3,776 uncertain 90.237 0.003
Click to View Chart Preview Click for Info isp5 [SPAC1039.09] Schizosaccharomyces pombe 4,128 uncertain 7259.816 1.3E-6
Click to View Chart Preview Click for Info SPCC965.11c Schizosaccharomyces pombe 4,542 uncertain 3628.61 0.063
Click to View Chart Preview Click for Info T1E3_130 [AT5G04770] Arabidopsis thaliana 4,866 uncertain 1.254 0.005
Click to View Chart Preview Click for Info SSY1 [YDR160W] Saccharomyces cerevisiae 4,886 uncertain 2.677 2.009
Click to View Chart Preview Click for Info AGP2 [YBR132C] Saccharomyces cerevisiae 5,648 uncertain 297.1 0.191
Click to View Chart Preview Click for Info CAN1 [YEL063C] Saccharomyces cerevisiae 5,719 uncertain 1489 0.05
Click to View Chart Preview Click for Info AGP3 [YFL055W] Saccharomyces cerevisiae 5,951 uncertain 285.7 1.033
Click to View Chart Preview Click for Info T21E18.1 [AT1G05940] Arabidopsis thaliana 7,497 uncertain 0.111 2.313
Click to View Chart Preview Click for Info F7J7.60 [AT4G21120] Arabidopsis thaliana 11,193 uncertain 2.433 0.146
Click to View Chart Preview Click for Info AT5g36940 Arabidopsis thaliana 11,466 uncertain 2.028 0.214
Click to View Chart Preview Click for Info At1g17120 Arabidopsis thaliana 15,419 uncertain 0.873 2.062
Click to View Chart Preview Click for Info F20H23.25 [AT3G03720] Arabidopsis thaliana 18,633 uncertain 1.625 2.3

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

Click for more information

Graph of HIP1 (from probeset YGR191W).

Click to enlarge