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Saccharomyces cerevisiae

Cyclebase periodic rank: 403

Periodic


Gene Features:

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Degradation Signals:
  1. KENbox
  2. PEST

Analysis Results

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Combined Analysis (all experiments)

P(per)
= 1.534E-14
P(reg)
= 0.0323
Peaktime
= S (29%)

Combined Peaktime

Peaktime Chart
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Experiments


Orthologs and Paralogs:

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Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info BUB1 [ENSG00000169679] Homo sapiens 15 G2/M 2.13E-18 2.88E-9
Periodic
Click to View Chart Preview Click for Info BUB1B [ENSG00000156970] Homo sapiens 33 G2 1.9E-16 6.73E-8
Periodic
Click to View Chart Preview Click for Info At2g33560 Arabidopsis thaliana 151 G1 0.008 0.002
Periodic
Click to View Chart Preview Click for Info At5g05510 Arabidopsis thaliana 673 uncertain 0.001 1.131
Click to View Chart Preview Click for Info MAD3 [YJL013C] Saccharomyces cerevisiae 1,654 uncertain 5.08E-7 2.464
Click to View Chart Preview Click for Info mad3 [SPCC1795.01c] Schizosaccharomyces pombe 2,998 uncertain 0.086 1.151
Click to View Chart Preview Click for Info bub1 [SPCC1322.12c] Schizosaccharomyces pombe 4,540 uncertain 5588.584 0.017

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

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Graph of BUB1 (from probeset YGR188C).

Click to enlarge