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Saccharomyces cerevisiae

Cyclebase periodic rank: 6,042



Analysis Results

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Combined Analysis (all experiments)

P(per)
= 687.8
P(reg)
= 0.9436
Peaktime
uncertain [see possible reasons why]

Combined Peaktime

Peaktime Chart
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Experiments


Orthologs and Paralogs:

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Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info SQP2 [AT5G24140] Arabidopsis thaliana 119 M/G1 2.17E-4 0.153
Periodic
Click to View Chart Preview Click for Info SQP1,2 [AT5G24160] Arabidopsis thaliana 1,632 uncertain 0.084 0.143
Click to View Chart Preview Click for Info SPBC713.12 Schizosaccharomyces pombe 2,791 uncertain 2.947 4.17E-4
Click to View Chart Preview Click for Info SQLE [ENSG00000104549] Homo sapiens 9,757 uncertain 0.535 0.699
Click to View Chart Preview Click for Info SQP1,1 [AT5G24150] Arabidopsis thaliana 10,901 uncertain 0.495 1.049
Click to View Chart Preview Click for Info XF1 [AT1G58440] Arabidopsis thaliana 13,196 uncertain 0.539 1.915
Click to View Chart Preview Click for Info At2g22830 Arabidopsis thaliana 18,323 uncertain 1.799 1.876
Click to View Chart Preview Click for Info At4g37760 Arabidopsis thaliana 19,717 uncertain 2.387 1.95

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

Click for more information

Graph of ERG1 (from probeset YGR175C).

Click to enlarge