Cyclebase.org

Search Type:
  • Gene Name
  • BLAST
Example searches:

 

Saccharomyces cerevisiae

Cyclebase periodic rank: 2,274



Analysis Results

[hide] [show]

Combined Analysis (all experiments)

P(per)
= 0.011
P(reg)
= 0.1631
Peaktime
uncertain [see possible reasons why]

Combined Peaktime

Peaktime Chart
Loading Image
Error Loading Image!

Experiments


Orthologs and Paralogs:

[hide] [show]
Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info RPL11A [AT2G42740] Arabidopsis thaliana 3,282 uncertain 0.087 0.635
Click to View Chart Preview Click for Info rpl11a [SPAC26A3.07c] Schizosaccharomyces pombe 4,083 uncertain 46.747 2.159
Click to View Chart Preview Click for Info RPL11A [YPR102C] Saccharomyces cerevisiae 4,307 uncertain 2.456 0.4
Click to View Chart Preview Click for Info rpl11-2 [SPBC17G9.10] Schizosaccharomyces pombe 4,394 uncertain 612.276 0.482
Click to View Chart Preview Click for Info RPL11B [AT3G58700] Arabidopsis thaliana 5,074 uncertain 0.204 0.523
Click to View Chart Preview Click for Info AT4g18730 Arabidopsis thaliana 17,284 uncertain 2.687 0.872

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

Click for more information

Graph of RPL11B (from probeset YGR085C).

Click to enlarge