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Saccharomyces cerevisiae

Cyclebase periodic rank: 3,080



Analysis Results

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Combined Analysis (all experiments)

P(per)
= 0.057
P(reg)
= 0.5722
Peaktime
uncertain [see possible reasons why]

Combined Peaktime

Peaktime Chart
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Experiments


Orthologs and Paralogs:

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Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info At4g22756 Arabidopsis thaliana 581 uncertain 0.042 0.011
Click to View Chart Preview Click for Info AT4g22753 Arabidopsis thaliana 999 uncertain 0.003 1.512
Click to View Chart Preview Click for Info erg25 [SPAC630.08c] Schizosaccharomyces pombe 1,537 uncertain 5.26E-7 0.121
Click to View Chart Preview Click for Info SC4MOL [ENSG00000052802] Homo sapiens 1,757 uncertain 0.154 0.002
Click to View Chart Preview Click for Info CH25H [ENSG00000138135] Homo sapiens 9,225 uncertain 0.206 1.345
Click to View Chart Preview Click for Info At4g12110 Arabidopsis thaliana 9,882 uncertain 2.269 0.089
Click to View Chart Preview Click for Info At1g07420 Arabidopsis thaliana 14,674 uncertain 0.681 2.248
Click to View Chart Preview Click for Info SMO [AT2G29390] Arabidopsis thaliana 15,916 uncertain 0.848 2.428

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

Click for more information

Graph of ERG25 (from probeset YGR060W).

Click to enlarge