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Saccharomyces cerevisiae

Cyclebase periodic rank: 4,269



Gene Features:

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Degradation Signals:
  1. PEST

Analysis Results

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Combined Analysis (all experiments)

P(per)
= 29.61
P(reg)
= 0.0307
Peaktime
uncertain [see possible reasons why]

Combined Peaktime

Peaktime Chart
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Experiments


Orthologs and Paralogs:

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Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info MAPK13 [ENSG00000156711] Homo sapiens 3 M 4.66E-20 3.1E-11
Periodic
Click to View Chart Preview Click for Info spm1 [SPBC119.08] Schizosaccharomyces pombe 97 M/G1 6.4E-37 1.6E-4
Periodic
Click to View Chart Preview Click for Info MPK13 [AT1G07880] Arabidopsis thaliana 209 G1 0.003 0.07
Periodic
Click to View Chart Preview Click for Info spk1 [SPAC31G5.09c] Schizosaccharomyces pombe 410 G2/M 1.93E-9 1.7E-8
Periodic
Click to View Chart Preview Click for Info SLT2 [YHR030C] Saccharomyces cerevisiae 818 uncertain 0.002 8.06E-4
Click to View Chart Preview Click for Info YKL161C Saccharomyces cerevisiae 1,060 uncertain 0.001 0.009
Click to View Chart Preview Click for Info FUS3 [YBL016W] Saccharomyces cerevisiae 1,481 uncertain 0.339 2.52E-5
Click to View Chart Preview Click for Info sty1 [SPAC24B11.06c] Schizosaccharomyces pombe 1,905 uncertain 4.43E-6 0.378
Click to View Chart Preview Click for Info MPK3 [AT3G45640] Arabidopsis thaliana 2,281 uncertain 0.167 0.115
Click to View Chart Preview Click for Info HOG1 [YLR113W] Saccharomyces cerevisiae 3,507 uncertain 0.633 0.172
Click to View Chart Preview Click for Info MPK14 [AT4G36450] Arabidopsis thaliana 3,800 uncertain 0.833 0.006
Click to View Chart Preview Click for Info SMK1 [YPR054W] Saccharomyces cerevisiae 3,936 uncertain 20.23 0.018
Click to View Chart Preview Click for Info Erk4 [ENSG00000141639] Homo sapiens 5,546 uncertain 2.796 0.009
Click to View Chart Preview Click for Info MPK1 [AT1G10210] Arabidopsis thaliana 6,073 uncertain 2.966 2.33E-4
Click to View Chart Preview Click for Info ERK6 [ENSG00000188130] Homo sapiens 7,683 uncertain 0.085 1.254
Click to View Chart Preview Click for Info MPK2 [AT1G59580] Arabidopsis thaliana 7,768 uncertain 0.26 0.912
Click to View Chart Preview Click for Info MAPK15 [ENSG00000181085] Homo sapiens 8,312 uncertain 0.062 2.6
Click to View Chart Preview Click for Info MPK17 [AT2G01450] Arabidopsis thaliana 8,562 uncertain 0.372 0.739
Click to View Chart Preview Click for Info MPK12 [AT2G46070] Arabidopsis thaliana 10,400 uncertain 2.929 0.068
Click to View Chart Preview Click for Info MPK20 [AT2G42880] Arabidopsis thaliana 11,242 uncertain 0.542 1.049
Click to View Chart Preview Click for Info ERK5 [ENSG00000166484] Homo sapiens 12,314 uncertain 0.931 2.119
Click to View Chart Preview Click for Info ERK [ENSG00000100030] Homo sapiens 12,963 uncertain 0.429 8.011
Click to View Chart Preview Click for Info GDPD3 [ENSG00000102886] Homo sapiens 13,001 uncertain 2.239 1.596
Click to View Chart Preview Click for Info p38-2 [ENSG00000185386] Homo sapiens 13,493 uncertain 2.537 2.382
Click to View Chart Preview Click for Info Mxi2 [ENSG00000112062] Homo sapiens 13,984 uncertain 3.989 3.666
Click to View Chart Preview Click for Info MPK15 [AT1G73670] Arabidopsis thaliana 14,243 uncertain 0.554 2.548
Click to View Chart Preview Click for Info MPK7 [AT2G18170] Arabidopsis thaliana 14,878 uncertain 2.644 0.461
Click to View Chart Preview Click for Info MPK5 [AT4G11330] Arabidopsis thaliana 15,489 uncertain 2.824 0.507
Click to View Chart Preview Click for Info MPK9 [AT3G18040] Arabidopsis thaliana 15,632 uncertain 0.768 2.547
Click to View Chart Preview Click for Info MPK18 [AT1G53510] Arabidopsis thaliana 16,234 uncertain 0.944 2.3
Click to View Chart Preview Click for Info MPK10 [AT3G59790] Arabidopsis thaliana 16,438 uncertain 1.563 1.331
Click to View Chart Preview Click for Info MPK8 [AT1G18150] Arabidopsis thaliana 17,144 uncertain 2.356 0.984
Click to View Chart Preview Click for Info MPK19 [AT3G14720] Arabidopsis thaliana 17,578 uncertain 2.836 0.89
Click to View Chart Preview Click for Info MPK16 [AT5G19010] Arabidopsis thaliana 18,319 uncertain 2.362 1.351
Click to View Chart Preview Click for Info MPK4 [AT4G01370] Arabidopsis thaliana 18,373 uncertain 1.759 1.957
Click to View Chart Preview Click for Info MPK6 [AT2G43790] Arabidopsis thaliana 18,700 uncertain 1.777 2.096

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

Click for more information

Graph of KSS1 (from probeset YGR040W).

Click to enlarge