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Saccharomyces cerevisiae

Cyclebase periodic rank: 5,069



Analysis Results

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Combined Analysis (all experiments)

P(per)
= 17.95
P(reg)
= 0.5101
Peaktime
uncertain [see possible reasons why]

Combined Peaktime

Peaktime Chart
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Experiments


Orthologs and Paralogs:

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Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info NUP100 [YKL068W] Saccharomyces cerevisiae 1,093 uncertain 6.21E-6 0.079
Click to View Chart Preview Click for Info nup45 [SPAC22G7.09c] Schizosaccharomyces pombe 2,586 uncertain 1.69E-5 3.992
Click to View Chart Preview Click for Info NUP116 [YMR047C] Saccharomyces cerevisiae 3,402 uncertain 0.067 1.206
Click to View Chart Preview Click for Info NUP42 [YDR192C] Saccharomyces cerevisiae 3,730 uncertain 0.077 2.748
Click to View Chart Preview Click for Info nup189 [SPAC1486.05] Schizosaccharomyces pombe 4,250 uncertain 281.289 0.299
Click to View Chart Preview Click for Info NUP145 [YGL092W] Saccharomyces cerevisiae 4,659 uncertain 1.565 1.739
Click to View Chart Preview Click for Info F18K10.27 [AT3G10650] Arabidopsis thaliana 12,924 uncertain 0.536 1.781
Click to View Chart Preview Click for Info AT1g59660 Arabidopsis thaliana 16,787 uncertain 2.025 1.062
Click to View Chart Preview Click for Info PRE [AT1G80680] Arabidopsis thaliana 19,472 uncertain 1.957 2.284
Click to View Chart Preview Click for Info At1g10390 Arabidopsis thaliana 20,837 uncertain 2.892 2.43

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

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Graph of NUP49 (from probeset YGL172W).

Click to enlarge