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Saccharomyces cerevisiae

Cyclebase periodic rank: 496

Periodic


Analysis Results

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Combined Analysis (all experiments)

P(per)
= 1.156E-13
P(reg)
= 0.0966
Peaktime
= S (37%)

Combined Peaktime

Peaktime Chart
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Experiments


Orthologs and Paralogs:

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Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info 1g52420 [AT3G15940] Arabidopsis thaliana 1,184 uncertain 0.002 2.444
Click to View Chart Preview Click for Info ALG2 [ENSG00000119523] Homo sapiens 1,478 uncertain 7.25E-5 1.771
Click to View Chart Preview Click for Info SUS1 [AT5G20830] Arabidopsis thaliana 4,251 uncertain 0.3 0.225
Click to View Chart Preview Click for Info alg2 [SPBC11B10.01] Schizosaccharomyces pombe 4,326 uncertain 214.691 2.668
Click to View Chart Preview Click for Info F13M7.9 [AT1G04920] Arabidopsis thaliana 4,424 uncertain 0.644 0.062
Click to View Chart Preview Click for Info At5g20280 Arabidopsis thaliana 5,603 uncertain 0.433 0.242
Click to View Chart Preview Click for Info T9A4.14 [AT4G10120] Arabidopsis thaliana 5,900 uncertain 1.786 0.004
Click to View Chart Preview Click for Info F7K15_40 [AT3G43190] Arabidopsis thaliana 6,881 uncertain 1.957 0.009
Click to View Chart Preview Click for Info At1g73370 Arabidopsis thaliana 7,421 uncertain 2.916 0.002
Click to View Chart Preview Click for Info At5g49190 Arabidopsis thaliana 8,103 uncertain 2.322 0.019
Click to View Chart Preview Click for Info T2H3.8 [AT4G02280] Arabidopsis thaliana 8,492 uncertain 2.195 0.037
Click to View Chart Preview Click for Info F19K6.13 [AT1G52420] Arabidopsis thaliana 9,373 uncertain 0.186 2.152
Click to View Chart Preview Click for Info T5K6_100 [AT5G11110] Arabidopsis thaliana 10,052 uncertain 0.214 2.208
Click to View Chart Preview Click for Info F9K20.16 [AT1G78800] Arabidopsis thaliana 11,434 uncertain 0.303 2.239
Click to View Chart Preview Click for Info F6F9.24 [AT1G19710] Arabidopsis thaliana 17,032 uncertain 1.062 2.489
Click to View Chart Preview Click for Info F1B16.5 [AT1G75420] Arabidopsis thaliana 19,744 uncertain 2.331 2.023
Click to View Chart Preview Click for Info AT5g37180 Arabidopsis thaliana 19,886 uncertain 2.375 2.064

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

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Graph of ALG2 (from probeset YGL065C).

Click to enlarge