Cyclebase.org

Search Type:
  • Gene Name
  • BLAST
Example searches:

 

Saccharomyces cerevisiae

Cyclebase periodic rank: 1,371



Gene Features:

[hide] [show]
Degradation Signals:
  1. KENbox

Analysis Results

[hide] [show]

Combined Analysis (all experiments)

P(per)
= 2.739E-6
P(reg)
= 0.4384
Peaktime
uncertain [see possible reasons why]

Combined Peaktime

Peaktime Chart
Loading Image
Error Loading Image!

Experiments


Orthologs and Paralogs:

[hide] [show]
Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info pmc1 [SPAPB2B4.04c] Schizosaccharomyces pombe 415 S 3.47E-13 1.16E-4
Periodic
Click to View Chart Preview Click for Info PMCA1 [ENSG00000070961] Homo sapiens 2,225 uncertain 0.002 0.383
Click to View Chart Preview Click for Info ACA7 [AT2G22950] Arabidopsis thaliana 4,273 uncertain 1.074 0.004
Click to View Chart Preview Click for Info ATP2B2 [ENSG00000157087] Homo sapiens 6,865 uncertain 0.267 0.239
Click to View Chart Preview Click for Info ATP2B4 [ENSG00000058668] Homo sapiens 6,866 uncertain 0.095 0.668
Click to View Chart Preview Click for Info AT5g53010 Arabidopsis thaliana 8,180 uncertain 0.158 1.873
Click to View Chart Preview Click for Info ACA4 [AT2G41560] Arabidopsis thaliana 8,500 uncertain 0.223 1.347
Click to View Chart Preview Click for Info ATP2B3 [ENSG00000067842] Homo sapiens 8,504 uncertain 0.206 0.869
Click to View Chart Preview Click for Info ACA9 [AT3G21180] Arabidopsis thaliana 9,426 uncertain 1.551 0.147
Click to View Chart Preview Click for Info ACA13 [AT3G22910] Arabidopsis thaliana 10,696 uncertain 2.839 0.087
Click to View Chart Preview Click for Info ACA1 [AT1G27770] Arabidopsis thaliana 10,709 uncertain 1.3 0.3
Click to View Chart Preview Click for Info ACA2 [AT4G37640] Arabidopsis thaliana 12,217 uncertain 2.186 0.253
Click to View Chart Preview Click for Info ACA8 [AT5G57110] Arabidopsis thaliana 13,514 uncertain 0.957 1.058
Click to View Chart Preview Click for Info ACA12 [AT3G63380] Arabidopsis thaliana 16,200 uncertain 1.446 1.367
Click to View Chart Preview Click for Info ACA11 [AT3G57330] Arabidopsis thaliana 16,626 uncertain 1.641 1.314
Click to View Chart Preview Click for Info ACA10 [AT4G29900] Arabidopsis thaliana 18,484 uncertain 2.183 1.55

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

Click for more information

Graph of PMC1 (from probeset YGL006W).

Click to enlarge