Cyclebase.org

Search Type:
  • Gene Name
  • BLAST
Example searches:

 

Saccharomyces cerevisiae

Cyclebase periodic rank: 2,434



Analysis Results

[hide] [show]

Combined Analysis (all experiments)

P(per)
= 0.002
P(reg)
= 1.59
Peaktime
uncertain [see possible reasons why]

Combined Peaktime

Peaktime Chart
Loading Image
Error Loading Image!

Experiments


Orthologs and Paralogs:

[hide] [show]
Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info SPAC2E1P5.03 Schizosaccharomyces pombe 62 G1 1.01E-39 1.9E-11
Periodic
Click to View Chart Preview Click for Info DNAJC1 [ENSG00000136770] Homo sapiens 1,857 uncertain 0.007 0.056
Click to View Chart Preview Click for Info At2g21650 Arabidopsis thaliana 1,884 uncertain 0.152 0.074
Click to View Chart Preview Click for Info AT5g17300 Arabidopsis thaliana 2,398 uncertain 0.055 0.576
Click to View Chart Preview Click for Info AT1g19510 Arabidopsis thaliana 2,802 uncertain 0.365 0.032
Click to View Chart Preview Click for Info At5g37260 Arabidopsis thaliana 2,935 uncertain 0.91 2.78E-4
Click to View Chart Preview Click for Info At5g05790 Arabidopsis thaliana 2,950 uncertain 0.424 0.025
Click to View Chart Preview Click for Info F7J8_180 [AT5G01200] Arabidopsis thaliana 4,184 uncertain 0.167 0.462
Click to View Chart Preview Click for Info ZUO1 [YGR285C] Saccharomyces cerevisiae 4,292 uncertain 26.09 0.037
Click to View Chart Preview Click for Info lcl4 [AT4G01280] Arabidopsis thaliana 5,535 uncertain 0.065 2.41
Click to View Chart Preview Click for Info At5g23650 Arabidopsis thaliana 6,731 uncertain 1.728 0.016
Click to View Chart Preview Click for Info DNAJC2 [ENSG00000105821] Homo sapiens 7,314 uncertain 0.012 6.776
Click to View Chart Preview Click for Info At1g75250 Arabidopsis thaliana 7,533 uncertain 2.706 0.003
Click to View Chart Preview Click for Info At5g08520 Arabidopsis thaliana 8,174 uncertain 3.05 0.004
Click to View Chart Preview Click for Info CCA1 [AT2G46830] Arabidopsis thaliana 9,376 uncertain 2.204 0.072
Click to View Chart Preview Click for Info AT5g58900 Arabidopsis thaliana 11,753 uncertain 0.619 1.049
Click to View Chart Preview Click for Info lcl1 [AT5G02840] Arabidopsis thaliana 11,918 uncertain 1.05 0.581
Click to View Chart Preview Click for Info At3g11280 Arabidopsis thaliana 12,034 uncertain 1.149 0.54
Click to View Chart Preview Click for Info lcl5 [AT3G09600] Arabidopsis thaliana 12,813 uncertain 0.619 1.45
Click to View Chart Preview Click for Info At5g06110 Arabidopsis thaliana 13,024 uncertain 0.774 1.173
Click to View Chart Preview Click for Info T1E3_120 [AT5G04760] Arabidopsis thaliana 13,140 uncertain 0.669 1.454
Click to View Chart Preview Click for Info At2g38090 Arabidopsis thaliana 13,897 uncertain 0.7 1.747
Click to View Chart Preview Click for Info At1g49010 Arabidopsis thaliana 15,705 uncertain 0.895 2.161
Click to View Chart Preview Click for Info At3g11450 Arabidopsis thaliana 16,167 uncertain 0.969 2.197
Click to View Chart Preview Click for Info AT5g45420 Arabidopsis thaliana 17,752 uncertain 2.034 1.392
Click to View Chart Preview Click for Info At1g01060 Arabidopsis thaliana 18,580 uncertain 2.641 1.26
Click to View Chart Preview Click for Info lcl3 [AT1G01520] Arabidopsis thaliana 18,764 uncertain 2.471 1.433
Click to View Chart Preview Click for Info lcl2 [AT5G52660] Arabidopsis thaliana 19,988 uncertain 2.077 2.49

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

Click for more information

Graph of ERJ5 (from probeset YFR041C).

Click to enlarge