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Saccharomyces cerevisiae

Cyclebase periodic rank: 3,097



Gene Features:

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Degradation Signals:
  1. PEST

Analysis Results

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Combined Analysis (all experiments)

P(per)
= 0.6449
P(reg)
= 0.0529
Peaktime
uncertain [see possible reasons why]

Combined Peaktime

Peaktime Chart
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Experiments


Orthologs and Paralogs:

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Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info SWI3 [YJL176C] Saccharomyces cerevisiae 1,026 uncertain 1.52E-8 0.4
Click to View Chart Preview Click for Info ssr1 [SPAC17G6.10] Schizosaccharomyces pombe 1,588 uncertain 2.02E-10 2.159
Click to View Chart Preview Click for Info SWI3A [AT2G47620] Arabidopsis thaliana 2,923 uncertain 0.026 2.073
Click to View Chart Preview Click for Info BAF170 [ENSG00000139613] Homo sapiens 3,418 uncertain 8.02E-4 5.036
Click to View Chart Preview Click for Info ssr2 [SPAC23H3.10] Schizosaccharomyces pombe 4,410 uncertain 254.914 8.9
Click to View Chart Preview Click for Info SWI3B [AT2G33610] Arabidopsis thaliana 4,683 uncertain 0.047 2.561
Click to View Chart Preview Click for Info SWI3D [AT4G34430] Arabidopsis thaliana 5,715 uncertain 0.09 1.747
Click to View Chart Preview Click for Info SRG3 [ENSG00000173473] Homo sapiens 8,619 uncertain 0.574 0.334
Click to View Chart Preview Click for Info MYSM1 [ENSG00000162601] Homo sapiens 10,385 uncertain 0.399 1.382
Click to View Chart Preview Click for Info SWI3C [AT1G21700] Arabidopsis thaliana 20,758 uncertain 2.681 2.541

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

Click for more information

Graph of RSC8 (from probeset YFR037C).

Click to enlarge