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Saccharomyces cerevisiae

Cyclebase periodic rank: 1,747



Gene Features:

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Degradation Signals:
  1. Dbox
  2. PEST

Analysis Results

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Combined Analysis (all experiments)

P(per)
= 1.942E-5
P(reg)
= 0.977
Peaktime
uncertain [see possible reasons why]

Combined Peaktime

Peaktime Chart
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Experiments


Orthologs and Paralogs:

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Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info SPAC24B11.12c Schizosaccharomyces pombe 237 M/G1 1.83E-18 4.4E-6
Periodic
Click to View Chart Preview Click for Info SPBC887.12 Schizosaccharomyces pombe 1,220 uncertain 3.52E-4 0.002
Click to View Chart Preview Click for Info SPAC4F10.16c Schizosaccharomyces pombe 1,396 uncertain 0.007 2.7E-4
Click to View Chart Preview Click for Info ALA7 [AT3G13900] Arabidopsis thaliana 2,934 uncertain 0.502 0.01
Click to View Chart Preview Click for Info DNF2 [YDR093W] Saccharomyces cerevisiae 3,746 uncertain 0.272 0.796
Click to View Chart Preview Click for Info ATP8B4 [ENSG00000104043] Homo sapiens 3,834 uncertain 3.208 0.002
Click to View Chart Preview Click for Info SPAC821.13c [SPAC955.01c] Schizosaccharomyces pombe 3,846 uncertain 102.941 0.006
Click to View Chart Preview Click for Info DRS2 [YAL026C] Saccharomyces cerevisiae 4,119 uncertain 138.1 0.004
Click to View Chart Preview Click for Info DNF3 [YMR162C] Saccharomyces cerevisiae 5,302 uncertain 252.2 0.073
Click to View Chart Preview Click for Info ATPVB [ENSG00000118322] Homo sapiens 5,472 uncertain 0.034 0.712
Click to View Chart Preview Click for Info ALA2 [AT5G44240] Arabidopsis thaliana 5,910 uncertain 0.077 2.226
Click to View Chart Preview Click for Info ALA10 [AT3G25610] Arabidopsis thaliana 7,739 uncertain 0.238 1.002
Click to View Chart Preview Click for Info ATPVC [ENSG00000206190] Homo sapiens 7,847 uncertain 0.944 0.127
Click to View Chart Preview Click for Info ALA9 [AT1G68710] Arabidopsis thaliana 9,689 uncertain 0.882 0.352
Click to View Chart Preview Click for Info PFIC [ENSG00000081923] Homo sapiens 9,766 uncertain 2.253 0.166
Click to View Chart Preview Click for Info ALA1 [AT5G04930] Arabidopsis thaliana 10,522 uncertain 0.266 1.981
Click to View Chart Preview Click for Info ALA3 [AT1G59820] Arabidopsis thaliana 10,597 uncertain 0.226 2.466
Click to View Chart Preview Click for Info ATPIF [ENSG00000058063] Homo sapiens 10,879 uncertain 2.096 0.364
Click to View Chart Preview Click for Info ALA6 [AT1G54280] Arabidopsis thaliana 11,639 uncertain 0.325 2.199
Click to View Chart Preview Click for Info ATP10D [ENSG00000145246] Homo sapiens 12,292 uncertain 1.309 1.471
Click to View Chart Preview Click for Info ATPIK [ENSG00000130270] Homo sapiens 13,097 uncertain 2.859 1.363
Click to View Chart Preview Click for Info ATP8B2 [ENSG00000143515] Homo sapiens 13,927 uncertain 4.858 2.535
Click to View Chart Preview Click for Info ALA8 [AT3G27870] Arabidopsis thaliana 15,810 uncertain 1.941 0.874
Click to View Chart Preview Click for Info ALA5 [AT1G72700] Arabidopsis thaliana 16,285 uncertain 1.724 1.131
Click to View Chart Preview Click for Info ALA4 [AT1G17500] Arabidopsis thaliana 17,251 uncertain 1.508 1.736
Click to View Chart Preview Click for Info ALA11 [AT1G13210] Arabidopsis thaliana 19,352 uncertain 2.251 1.867
Click to View Chart Preview Click for Info ALA12 [AT1G26130] Arabidopsis thaliana 19,354 uncertain 2.307 1.813

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

Click for more information

Graph of DNF1 (from probeset YER166W).

Click to enlarge