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Saccharomyces cerevisiae

Cyclebase periodic rank: 3,371



Gene Features:

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Degradation Signals:
  1. PEST

Analysis Results

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Combined Analysis (all experiments)

P(per)
= 0.1423
P(reg)
= 0.5271
Peaktime
uncertain [see possible reasons why]

Combined Peaktime

Peaktime Chart
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Experiments


Orthologs and Paralogs:

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Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info rga7 [SPBC23G7.08c] Schizosaccharomyces pombe 756 uncertain 4.5E-8 4.92E-4
Click to View Chart Preview Click for Info RGD1 [YBR260C] Saccharomyces cerevisiae 3,888 uncertain 0.073 4.436
Click to View Chart Preview Click for Info ARHGAP12 [ENSG00000165322] Homo sapiens 5,079 uncertain 2.585 0.007
Click to View Chart Preview Click for Info ARHGAP27 [ENSG00000185602] Homo sapiens 9,489 uncertain 0.475 0.678
Click to View Chart Preview Click for Info ARHGAP9 [ENSG00000123329] Homo sapiens 12,879 uncertain 0.6 5.288

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

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Graph of BEM2 (from probeset YER155C).

Click to enlarge