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Saccharomyces cerevisiae

Cyclebase periodic rank: 6,021



Analysis Results

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Combined Analysis (all experiments)

P(per)
= 909.2
P(reg)
= 0.5391
Peaktime
uncertain [see possible reasons why]

Combined Peaktime

Peaktime Chart
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Experiments


Orthologs and Paralogs:

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Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info SPCC1840.07c Schizosaccharomyces pombe 510 uncertain 2.02E-11 1.33E-4
Click to View Chart Preview Click for Info dis2 [SPBC776.02c] Schizosaccharomyces pombe 727 uncertain 7.84E-16 0.251
Click to View Chart Preview Click for Info At3g09970 Arabidopsis thaliana 799 uncertain 0.001 1.384
Click to View Chart Preview Click for Info PPZ2 [YDR436W] Saccharomyces cerevisiae 880 uncertain 3.73E-10 0.462
Click to View Chart Preview Click for Info sds21 [SPCC31H12.05c] Schizosaccharomyces pombe 2,215 uncertain 0.08 0.019
Click to View Chart Preview Click for Info pzh1 [SPAC57A7.08] Schizosaccharomyces pombe 2,389 uncertain 0.108 0.059
Click to View Chart Preview Click for Info BSL2 [AT1G08420] Arabidopsis thaliana 3,983 uncertain 0.041 2.259
Click to View Chart Preview Click for Info PPQ1 [YPL179W] Saccharomyces cerevisiae 4,257 uncertain 2.464 0.358
Click to View Chart Preview Click for Info TOPP2 [AT5G59160] Arabidopsis thaliana 5,054 uncertain 0.054 2.568
Click to View Chart Preview Click for Info T22K18.23 [AT3G09960] Arabidopsis thaliana 5,058 uncertain 1.619 0.002
Click to View Chart Preview Click for Info PPZ1 [YML016C] Saccharomyces cerevisiae 5,737 uncertain 66.85 1.258
Click to View Chart Preview Click for Info SPDYA [ENSG00000163806] Homo sapiens 8,623 uncertain 0.13 1.475
Click to View Chart Preview Click for Info ENSG00000171103 Homo sapiens 8,624 uncertain 0.13 1.475
Click to View Chart Preview Click for Info TOPP1 [AT2G29400] Arabidopsis thaliana 9,737 uncertain 0.254 1.641
Click to View Chart Preview Click for Info TOPP9 [AT3G05580] Arabidopsis thaliana 10,718 uncertain 0.452 1.111
Click to View Chart Preview Click for Info BSU1 [AT1G03445] Arabidopsis thaliana 11,551 uncertain 0.517 1.22
Click to View Chart Preview Click for Info TOPP7 [AT5G43380] Arabidopsis thaliana 13,264 uncertain 1.594 0.524
Click to View Chart Preview Click for Info TOPP5 [AT3G46820] Arabidopsis thaliana 14,075 uncertain 0.96 1.254
Click to View Chart Preview Click for Info TOPP6 [AT4G11240] Arabidopsis thaliana 14,377 uncertain 0.721 1.926
Click to View Chart Preview Click for Info At1g18480 Arabidopsis thaliana 14,981 uncertain 0.743 2.213
Click to View Chart Preview Click for Info F10K1.27 [AT1G07010] Arabidopsis thaliana 16,651 uncertain 1.489 1.487
Click to View Chart Preview Click for Info TOPP8 [AT5G27840] Arabidopsis thaliana 18,452 uncertain 2.502 1.304
Click to View Chart Preview Click for Info BSL1 [AT4G03080] Arabidopsis thaliana 18,660 uncertain 1.489 2.571
Click to View Chart Preview Click for Info TOPP3 [AT1G64040] Arabidopsis thaliana 19,514 uncertain 1.783 2.588
Click to View Chart Preview Click for Info TOPP4 [AT2G39840] Arabidopsis thaliana 20,140 uncertain 2.591 2.016

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

Click for more information

Graph of GLC7 (from probeset YER133W).

Click to enlarge