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Saccharomyces cerevisiae

Cyclebase periodic rank: 3,859



Gene Features:

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Degradation Signals:
  1. Dbox
  2. PEST

Analysis Results

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Combined Analysis (all experiments)

P(per)
= 0.9207
P(reg)
= 0.3213
Peaktime
uncertain [see possible reasons why]

Combined Peaktime

Peaktime Chart
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Experiments


Orthologs and Paralogs:

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Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info At1g47380 Arabidopsis thaliana 427 uncertain 0.017 0.055
Click to View Chart Preview Click for Info ptc1 [SPCC4F11.02] Schizosaccharomyces pombe 674 uncertain 1.08E-10 0.003
Click to View Chart Preview Click for Info ABI1 [AT4G26080] Arabidopsis thaliana 713 uncertain 0.01 0.371
Click to View Chart Preview Click for Info AtPPC3 [AT2G20630] Arabidopsis thaliana 923 uncertain 0.003 1.337
Click to View Chart Preview Click for Info PTC4 [YBR125C] Saccharomyces cerevisiae 994 uncertain 1.46E-9 0.693
Click to View Chart Preview Click for Info ptc3 [SPAC2G11.07c] Schizosaccharomyces pombe 1,163 uncertain 1.43E-8 0.043
Click to View Chart Preview Click for Info PP2C5 [AT2G40180] Arabidopsis thaliana 1,256 uncertain 0.223 3.83E-4
Click to View Chart Preview Click for Info ptc2 [SPCC1223.11] Schizosaccharomyces pombe 1,300 uncertain 2.06E-6 0.021
Click to View Chart Preview Click for Info At1g16220 Arabidopsis thaliana 1,450 uncertain 0.124 0.035
Click to View Chart Preview Click for Info ptc4 [SPAC4A8.03c] Schizosaccharomyces pombe 2,152 uncertain 4.17E-6 1.057
Click to View Chart Preview Click for Info PTC6 [YCR079W] Saccharomyces cerevisiae 3,625 uncertain 1.518 0.104
Click to View Chart Preview Click for Info At2g29380 Arabidopsis thaliana 3,638 uncertain 0.759 0.007
Click to View Chart Preview Click for Info PTC3 [YBL056W] Saccharomyces cerevisiae 3,740 uncertain 0.236 0.907
Click to View Chart Preview Click for Info AT1g67820 Arabidopsis thaliana 4,791 uncertain 0.347 0.235
Click to View Chart Preview Click for Info At5g59220 Arabidopsis thaliana 5,233 uncertain 0.204 0.553
Click to View Chart Preview Click for Info PTC1 [YDL006W] Saccharomyces cerevisiae 5,610 uncertain 17.06 2.819
Click to View Chart Preview Click for Info HAB2 [AT1G17550] Arabidopsis thaliana 5,999 uncertain 0.093 1.84
Click to View Chart Preview Click for Info At5g26010 Arabidopsis thaliana 6,191 uncertain 0.146 1.146
Click to View Chart Preview Click for Info At3g16800 Arabidopsis thaliana 6,713 uncertain 0.362 0.444
Click to View Chart Preview Click for Info KIAA0907 [ENSG00000132680] Homo sapiens 6,774 uncertain 0.039 1.539
Click to View Chart Preview Click for Info PPM1K [ENSG00000163644] Homo sapiens 6,775 uncertain 0.039 1.539
Click to View Chart Preview Click for Info ABI2 [AT5G57050] Arabidopsis thaliana 6,958 uncertain 1.393 0.051
Click to View Chart Preview Click for Info PPM1D [ENSG00000170836] Homo sapiens 7,037 uncertain 0.041 1.714
Click to View Chart Preview Click for Info At1g17545 Arabidopsis thaliana 7,525 uncertain 2.666 0.004
Click to View Chart Preview Click for Info At5g36250 Arabidopsis thaliana 8,770 uncertain 0.241 1.319
Click to View Chart Preview Click for Info POPX1 [ENSG00000175175] Homo sapiens 8,871 uncertain 0.759 0.295
Click to View Chart Preview Click for Info AT4g31860 Arabidopsis thaliana 8,901 uncertain 0.22 1.527
Click to View Chart Preview Click for Info At1g79630 Arabidopsis thaliana 9,039 uncertain 1.876 0.087
Click to View Chart Preview Click for Info AT2g30020 Arabidopsis thaliana 9,491 uncertain 2.378 0.063
Click to View Chart Preview Click for Info At2g40860 Arabidopsis thaliana 9,696 uncertain 0.176 2.511
Click to View Chart Preview Click for Info F28H19.16 [AT1G43900] Arabidopsis thaliana 9,875 uncertain 0.186 2.481
Click to View Chart Preview Click for Info At3g15260 Arabidopsis thaliana 9,999 uncertain 0.223 2.068
Click to View Chart Preview Click for Info F10K1.13 [AT1G07160] Arabidopsis thaliana 10,172 uncertain 2.276 0.104
Click to View Chart Preview Click for Info T30N20_10 [AT5G10740] Arabidopsis thaliana 10,199 uncertain 1.44 0.22
Click to View Chart Preview Click for Info AT4g32950 Arabidopsis thaliana 10,265 uncertain 2.573 0.085
Click to View Chart Preview Click for Info At3g62260 Arabidopsis thaliana 10,360 uncertain 0.994 0.379
Click to View Chart Preview Click for Info F20O9.80 [AT4G28400] Arabidopsis thaliana 10,604 uncertain 0.365 1.387
Click to View Chart Preview Click for Info At1g09160 Arabidopsis thaliana 10,877 uncertain 1.486 0.266
Click to View Chart Preview Click for Info F16M2_180 [AT3G63330] Arabidopsis thaliana 11,393 uncertain 1.043 0.495
Click to View Chart Preview Click for Info F26O13.110 [AT3G51470] Arabidopsis thaliana 12,001 uncertain 2.709 0.172
Click to View Chart Preview Click for Info At2g34740 Arabidopsis thaliana 12,171 uncertain 2.285 0.234
Click to View Chart Preview Click for Info At5g51760 Arabidopsis thaliana 12,890 uncertain 2.666 0.242
Click to View Chart Preview Click for Info ILKAP [ENSG00000132323] Homo sapiens 13,629 uncertain 3.815 1.865
Click to View Chart Preview Click for Info PPH1 [AT4G27800] Arabidopsis thaliana 13,710 uncertain 1.854 0.503
Click to View Chart Preview Click for Info T11I11.14 [AT1G78200] Arabidopsis thaliana 14,052 uncertain 0.684 1.872
Click to View Chart Preview Click for Info At5g27930 Arabidopsis thaliana 14,158 uncertain 0.681 1.939
Click to View Chart Preview Click for Info F7A7_220 [AT5G01700] Arabidopsis thaliana 14,216 uncertain 0.966 1.295
Click to View Chart Preview Click for Info AT2g25620 Arabidopsis thaliana 15,596 uncertain 3.084 0.468
Click to View Chart Preview Click for Info KAPP [AT5G19280] Arabidopsis thaliana 16,053 uncertain 1.276 1.537
Click to View Chart Preview Click for Info At1g68410 Arabidopsis thaliana 16,312 uncertain 1.548 1.301
Click to View Chart Preview Click for Info At3g17250 Arabidopsis thaliana 16,575 uncertain 1.353 1.64
Click to View Chart Preview Click for Info HAB1 [AT1G72770] Arabidopsis thaliana 16,643 uncertain 1.944 1.076
Click to View Chart Preview Click for Info PP2CA [AT3G11410] Arabidopsis thaliana 16,748 uncertain 1.115 2.154
Click to View Chart Preview Click for Info At1g34750 Arabidopsis thaliana 17,376 uncertain 2.384 1.034
Click to View Chart Preview Click for Info AtPPC4 [AT2G25070] Arabidopsis thaliana 17,812 uncertain 2.539 1.083
Click to View Chart Preview Click for Info AIP1 [AT1G07430] Arabidopsis thaliana 17,989 uncertain 1.737 1.793
Click to View Chart Preview Click for Info At1g22280 Arabidopsis thaliana 18,168 uncertain 2.207 1.405
Click to View Chart Preview Click for Info AT1g03590 Arabidopsis thaliana 18,303 uncertain 1.604 2.145
Click to View Chart Preview Click for Info At3g05640 Arabidopsis thaliana 18,364 uncertain 1.842 1.847
Click to View Chart Preview Click for Info T10F20.4 [AT1G18030] Arabidopsis thaliana 18,534 uncertain 1.641 2.211
Click to View Chart Preview Click for Info At2g33700 Arabidopsis thaliana 19,152 uncertain 1.935 2.124
Click to View Chart Preview Click for Info WIN2 [AT4G31750] Arabidopsis thaliana 19,480 uncertain 1.935 2.323
Click to View Chart Preview Click for Info T2J15.5 [AT1G48040] Arabidopsis thaliana 19,614 uncertain 2.393 1.882
Click to View Chart Preview Click for Info At2g20050 Arabidopsis thaliana 19,690 uncertain 2.108 2.239
Click to View Chart Preview Click for Info F16M2_170 [AT3G63320] Arabidopsis thaliana 19,982 uncertain 2.585 1.911
Click to View Chart Preview Click for Info At5g53140 Arabidopsis thaliana 20,528 uncertain 2.817 2.137
Click to View Chart Preview Click for Info At3g02750 Arabidopsis thaliana 20,556 uncertain 3.068 1.952
Click to View Chart Preview Click for Info At5g24940 Arabidopsis thaliana 20,603 uncertain 2.981 2.068

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

Click for more information

Graph of PTC2 (from probeset YER089C).

Click to enlarge