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Saccharomyces cerevisiae

Cyclebase periodic rank: 4,829



Analysis Results

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Combined Analysis (all experiments)

P(per)
= 2.074
P(reg)
= 2.158
Peaktime
uncertain [see possible reasons why]

Combined Peaktime

Peaktime Chart
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Experiments


Orthologs and Paralogs:

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Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info SPBC3E7.11c Schizosaccharomyces pombe 2,746 uncertain 0.035 0.562
Click to View Chart Preview Click for Info cwf23 [SPCC10H11.02] Schizosaccharomyces pombe 2,989 uncertain 0.999 0.12
Click to View Chart Preview Click for Info At2g21510 Arabidopsis thaliana 3,400 uncertain 0.034 2.057
Click to View Chart Preview Click for Info F22K20.12 [AT1G77020] Arabidopsis thaliana 3,488 uncertain 1.969 1.46E-5
Click to View Chart Preview Click for Info SPAC4H3.01 Schizosaccharomyces pombe 3,506 uncertain 10.591 0.041
Click to View Chart Preview Click for Info DNAJC12 [ENSG00000108176] Homo sapiens 4,722 uncertain 0.264 0.052
Click to View Chart Preview Click for Info DJP1 [YIR004W] Saccharomyces cerevisiae 4,869 uncertain 4.537 1.138
Click to View Chart Preview Click for Info At5g23590 Arabidopsis thaliana 15,259 uncertain 0.811 2.16
Click to View Chart Preview Click for Info AT4g39150 Arabidopsis thaliana 16,769 uncertain 1.09 2.227
Click to View Chart Preview Click for Info ATJ10 [AT1G76700] Arabidopsis thaliana 20,923 uncertain 3.09 2.424
Click to View Chart Preview Click for Info At1g21080 Arabidopsis thaliana 20,935 uncertain 3.099 2.48

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

Click for more information

Graph of CAJ1 (from probeset YER048C).

Click to enlarge