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Saccharomyces cerevisiae

Cyclebase periodic rank: 2,187



Gene Features:

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Degradation Signals:
  1. PEST

Analysis Results

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Combined Analysis (all experiments)

P(per)
= 4.911
P(reg)
= 1.887E-5
Peaktime
uncertain [see possible reasons why]

Combined Peaktime

Peaktime Chart
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Experiments


Orthologs and Paralogs:

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Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info HRS [ENSG00000100650] Homo sapiens 534 S 2.17E-6 0.123
Periodic
Click to View Chart Preview Click for Info SFRS6 [ENSG00000124193] Homo sapiens 1,664 uncertain 7.62E-4 0.296
Click to View Chart Preview Click for Info SFRS4 [ENSG00000116350] Homo sapiens 2,752 uncertain 2.352 7.45E-4
Click to View Chart Preview Click for Info COH1 [ENSG00000132549] Homo sapiens 2,753 uncertain 2.352 7.45E-4
Click to View Chart Preview Click for Info RSP31 [AT3G61860] Arabidopsis thaliana 3,252 uncertain 0.027 2.403
Click to View Chart Preview Click for Info srp2 [SPAC16.02c] Schizosaccharomyces pombe 3,932 uncertain 295.901 8.34E-4
Click to View Chart Preview Click for Info RSP40 [AT4G25500] Arabidopsis thaliana 14,066 uncertain 0.693 1.848
Click to View Chart Preview Click for Info At2g46610 Arabidopsis thaliana 17,275 uncertain 1.241 2.206
Click to View Chart Preview Click for Info RSP41 [AT5G52040] Arabidopsis thaliana 20,015 uncertain 2.467 2.044

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

Click for more information

Graph of NPL3 (from probeset YDR432W).

Click to enlarge