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Saccharomyces cerevisiae

Cyclebase periodic rank: 397

Periodic


Analysis Results

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Combined Analysis (all experiments)

P(per)
= 9.411E-11
P(reg)
= 0.0012
Peaktime
= G2 (66%)

Combined Peaktime

Peaktime Chart
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Experiments


Orthologs and Paralogs:

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Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info At2g24040 Arabidopsis thaliana 103 S 2.26E-4 0.121
Periodic
Click to View Chart Preview Click for Info pmp31 [SPCC1183.09c] Schizosaccharomyces pombe 657 uncertain 2.18E-13 0.019
Click to View Chart Preview Click for Info At4g30650 Arabidopsis thaliana 880 uncertain 0.08 0.008
Click to View Chart Preview Click for Info pmp3 [SPBC713.11c] Schizosaccharomyces pombe 1,135 uncertain 0.003 2E-5
Click to View Chart Preview Click for Info SNA3 [YJL151C] Saccharomyces cerevisiae 2,051 uncertain 2.323 4.4E-5
Click to View Chart Preview Click for Info At1g57550 Arabidopsis thaliana 4,244 uncertain 0.108 0.811
Click to View Chart Preview Click for Info SNA4 [YDL123W] Saccharomyces cerevisiae 4,309 uncertain 0.461 2.135
Click to View Chart Preview Click for Info RCI2B [AT3G05890] Arabidopsis thaliana 4,416 uncertain 0.461 0.127
Click to View Chart Preview Click for Info RCI2A [AT3G05880] Arabidopsis thaliana 6,216 uncertain 2.167 0.002
Click to View Chart Preview Click for Info At4g30660 Arabidopsis thaliana 17,010 uncertain 2.068 1.108
Click to View Chart Preview Click for Info At2g38905 Arabidopsis thaliana 17,512 uncertain 1.78 1.531

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

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Graph of PMP3 (from probeset YDR276C).

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