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Saccharomyces cerevisiae

Cyclebase periodic rank: 2,699



Analysis Results

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Combined Analysis (all experiments)

P(per)
= 0.0058
P(reg)
= 1.464
Peaktime
uncertain [see possible reasons why]

Combined Peaktime

Peaktime Chart
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Experiments


Orthologs and Paralogs:

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Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info CAT3 [AT1G20620] Arabidopsis thaliana 164 G1 0.005 0.007
Periodic
Click to View Chart Preview Click for Info cta1 [SPCC757.07c] Schizosaccharomyces pombe 840 uncertain 0.01 4.79E-10
Click to View Chart Preview Click for Info CAT2 [AT4G35090] Arabidopsis thaliana 1,503 uncertain 0.046 0.278
Click to View Chart Preview Click for Info CTT1 [YGR088W] Saccharomyces cerevisiae 5,625 uncertain 38.66 1.326
Click to View Chart Preview Click for Info CAT1 [AT1G20630] Arabidopsis thaliana 7,608 uncertain 1.08 0.131

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

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Graph of CTA1 (from probeset YDR256C).

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