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Saccharomyces cerevisiae

Cyclebase periodic rank: 5,759



Gene Features:

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Phosphorylated By:
  1. Cdc28p

Analysis Results

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Combined Analysis (all experiments)

P(per)
= 83.14
P(reg)
= 1.118
Peaktime
uncertain [see possible reasons why]

Combined Peaktime

Peaktime Chart
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Experiments


Orthologs and Paralogs:

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Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info UBP11 [YKR098C] Saccharomyces cerevisiae 317 M 2.36E-13 0.001
Periodic
Click to View Chart Preview Click for Info ubp4 [SPBC18H10.08c] Schizosaccharomyces pombe 673 uncertain 3.28E-16 0.191
Click to View Chart Preview Click for Info UBP7 [YIL156W] Saccharomyces cerevisiae 1,892 uncertain 4.04E-6 2.885
Click to View Chart Preview Click for Info UBP5 [YER144C] Saccharomyces cerevisiae 5,615 uncertain 25.39 1.921
Click to View Chart Preview Click for Info USP37 [ENSG00000135913] Homo sapiens 5,884 uncertain 0.053 0.615
Click to View Chart Preview Click for Info USP21 [ENSG00000143258] Homo sapiens 9,452 uncertain 0.199 1.583
Click to View Chart Preview Click for Info USP50 [ENSG00000170236] Homo sapiens 9,629 uncertain 0.288 1.217
Click to View Chart Preview Click for Info UBP27 [AT4G39370] Arabidopsis thaliana 18,306 uncertain 1.396 2.534

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

Click for more information

Graph of DOA4 (from probeset YDR069C).

Click to enlarge