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Saccharomyces cerevisiae

Cyclebase periodic rank: 1,407



Gene Features:

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Degradation Signals:
  1. KENbox

Analysis Results

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Combined Analysis (all experiments)

P(per)
= 0.003
P(reg)
= 0.0229
Peaktime
uncertain [see possible reasons why]

Combined Peaktime

Peaktime Chart
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Experiments


Orthologs and Paralogs:

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Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info ENA2 [YDR039C] Saccharomyces cerevisiae 806 uncertain 5.16E-5 0.005
Click to View Chart Preview Click for Info pmr1 [SPBC31E1.02c] Schizosaccharomyces pombe 1,028 uncertain 8.62E-4 3.16E-5
Click to View Chart Preview Click for Info ENA5 [YDR038C] Saccharomyces cerevisiae 1,329 uncertain 0.006 0.008
Click to View Chart Preview Click for Info PMR1 [YGL167C] Saccharomyces cerevisiae 1,909 uncertain 0.026 0.019
Click to View Chart Preview Click for Info cta3 [SPBC839.06] Schizosaccharomyces pombe 2,272 uncertain 0.101 0.018
Click to View Chart Preview Click for Info ATP2A3 [ENSG00000074370] Homo sapiens 5,648 uncertain 0.012 2.202
Click to View Chart Preview Click for Info ECA3 [AT1G10130] Arabidopsis thaliana 14,432 uncertain 0.601 2.433
Click to View Chart Preview Click for Info ECA2 [AT4G00900] Arabidopsis thaliana 16,394 uncertain 1.969 0.994

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

Click for more information

Graph of ENA1 (from probeset YDR040C).

Click to enlarge