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Saccharomyces cerevisiae

Cyclebase periodic rank: 5,104



Gene Features:

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Degradation Signals:
  1. KENbox

Analysis Results

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Combined Analysis (all experiments)

P(per)
= 4.873
P(reg)
= 2.083
Peaktime
uncertain [see possible reasons why]

Combined Peaktime

Peaktime Chart
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Experiments


Orthologs and Paralogs:

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Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info gdh1 [SPCC622.12c] Schizosaccharomyces pombe 512 uncertain 8.18E-8 3.53E-8
Click to View Chart Preview Click for Info GDH1 [YOR375C] Saccharomyces cerevisiae 1,430 uncertain 0.008 0.01
Click to View Chart Preview Click for Info SPCC132.04c Schizosaccharomyces pombe 1,654 uncertain 59.209 2.97E-14
Click to View Chart Preview Click for Info GDH1 [AT5G18170] Arabidopsis thaliana 2,995 uncertain 0.365 0.051
Click to View Chart Preview Click for Info GDH3 [YAL062W] Saccharomyces cerevisiae 3,050 uncertain 1.816 0.016
Click to View Chart Preview Click for Info GDH2 [AT5G07440] Arabidopsis thaliana 3,533 uncertain 0.591 0.021
Click to View Chart Preview Click for Info GSH3 [AT3G03910] Arabidopsis thaliana 15,397 uncertain 0.867 2.066
Click to View Chart Preview Click for Info F19C24.7 [AT1G51720] Arabidopsis thaliana 19,332 uncertain 2.176 1.933

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

Click for more information

Graph of GDH2 (from probeset YDL215C).

Click to enlarge