Cyclebase.org

Search Type:
  • Gene Name
  • BLAST
Example searches:

 

Saccharomyces cerevisiae

Cyclebase periodic rank: 3,365



Analysis Results

[hide] [show]

Combined Analysis (all experiments)

P(per)
= 0.4396
P(reg)
= 0.1684
Peaktime
uncertain [see possible reasons why]

Combined Peaktime

Peaktime Chart
Loading Image
Error Loading Image!

Experiments


Orthologs and Paralogs:

[hide] [show]
Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info ARL4A [ENSG00000122644] Homo sapiens 376 G2 3.63E-8 0.402
Periodic
Click to View Chart Preview Click for Info LAK [ENSG00000188042] Homo sapiens 1,003 uncertain 4.29E-4 0.041
Click to View Chart Preview Click for Info ARL5B [ENSG00000165997] Homo sapiens 1,329 uncertain 0.251 3.05E-4
Click to View Chart Preview Click for Info F27A10.8 [AT2G24765] Arabidopsis thaliana 1,905 uncertain 0.012 1.909
Click to View Chart Preview Click for Info ARL11 [ENSG00000152213] Homo sapiens 2,039 uncertain 0.02 0.027
Click to View Chart Preview Click for Info ARF1 [YDL192W] Saccharomyces cerevisiae 2,185 uncertain 0.017 0.075
Click to View Chart Preview Click for Info arf1 [SPBC4F6.18c] Schizosaccharomyces pombe 2,333 uncertain 0.001 0.31
Click to View Chart Preview Click for Info ENSG00000136447 Homo sapiens 3,691 uncertain 0.021 0.262
Click to View Chart Preview Click for Info ARL5 [ENSG00000162980] Homo sapiens 7,976 uncertain 0.347 0.372
Click to View Chart Preview Click for Info TRIM23 [ENSG00000113595] Homo sapiens 10,160 uncertain 1.441 0.332
Click to View Chart Preview Click for Info AT1g70490 Arabidopsis thaliana 10,423 uncertain 0.325 1.51
Click to View Chart Preview Click for Info ARF4 [ENSG00000168374] Homo sapiens 12,498 uncertain 1.81 1.241
Click to View Chart Preview Click for Info ARF2-A [AT1G23490] Arabidopsis thaliana 12,574 uncertain 0.644 1.29
Click to View Chart Preview Click for Info ARF3 [ENSG00000134287] Homo sapiens 13,461 uncertain 2.716 2.17
Click to View Chart Preview Click for Info ARL9 [ENSG00000196503] Homo sapiens 13,540 uncertain 5.14 1.234
Click to View Chart Preview Click for Info ARF5 [ENSG00000004059] Homo sapiens 13,893 uncertain 3.297 3.414
Click to View Chart Preview Click for Info T15N1_160 [AT5G14670] Arabidopsis thaliana 16,265 uncertain 1.003 2.159
Click to View Chart Preview Click for Info F2K13_210 [AT5G17060] Arabidopsis thaliana 18,343 uncertain 1.65 2.097
Click to View Chart Preview Click for Info At1g10630 Arabidopsis thaliana 19,323 uncertain 2.012 2.118
Click to View Chart Preview Click for Info At2g15310 Arabidopsis thaliana 19,507 uncertain 2.245 1.958
Click to View Chart Preview Click for Info At3g03120 Arabidopsis thaliana 19,795 uncertain 2.786 1.655
Click to View Chart Preview Click for Info F8A5.3 [AT3G62290] Arabidopsis thaliana 20,225 uncertain 2.272 2.443
Click to View Chart Preview Click for Info AT2g47170 Arabidopsis thaliana 20,914 uncertain 2.978 2.513

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

Click for more information

Graph of ARF2 (from probeset YDL137W).

Click to enlarge