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Saccharomyces cerevisiae

Cyclebase periodic rank: 3,381



Gene Features:

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Degradation Signals:
  1. Dbox
  2. PEST

Analysis Results

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Combined Analysis (all experiments)

P(per)
= 0.2522
P(reg)
= 0.3061
Peaktime
uncertain [see possible reasons why]

Combined Peaktime

Peaktime Chart
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Experiments


Orthologs and Paralogs:

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Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info lys4 [SPBC1105.02c] Schizosaccharomyces pombe 1,253 uncertain 9.04E-6 0.009
Click to View Chart Preview Click for Info MAM1 [AT5G23010] Arabidopsis thaliana 2,763 uncertain 0.111 0.322
Click to View Chart Preview Click for Info LEU9 [YOR108W] Saccharomyces cerevisiae 2,822 uncertain 0.034 0.387
Click to View Chart Preview Click for Info LYS20 [YDL182W] Saccharomyces cerevisiae 4,015 uncertain 3.08 0.15
Click to View Chart Preview Click for Info LEU4 [YNL104C] Saccharomyces cerevisiae 4,251 uncertain 23.77 0.037
Click to View Chart Preview Click for Info MAM3 [AT5G23020] Arabidopsis thaliana 7,388 uncertain 2.303 0.007
Click to View Chart Preview Click for Info IPMS1 [AT1G18500] Arabidopsis thaliana 11,061 uncertain 0.387 1.485
Click to View Chart Preview Click for Info IPMS2 [AT1G74040] Arabidopsis thaliana 11,397 uncertain 0.294 2.296

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

Click for more information

Graph of LYS21 (from probeset YDL131W).

Click to enlarge