Cyclebase.org

Search Type:
  • Gene Name
  • BLAST
Example searches:

 

Saccharomyces cerevisiae

Cyclebase periodic rank: 1,316



Gene Features:

[hide] [show]
Degradation Signals:
  1. Dbox
  2. PEST
Phosphorylated By:
  1. Cdc28p

Analysis Results

[hide] [show]

Combined Analysis (all experiments)

P(per)
= 5.105E-5
P(reg)
= 0.1293
Peaktime
uncertain [see possible reasons why]

Combined Peaktime

Peaktime Chart
Loading Image
Error Loading Image!

Experiments


Orthologs and Paralogs:

[hide] [show]
Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info VPS17 [YOR132W] Saccharomyces cerevisiae 758 uncertain 1.57E-8 0.04
Click to View Chart Preview Click for Info mvp1 [SPAC3A11.06] Schizosaccharomyces pombe 793 uncertain 2.66E-5 3.24E-6
Click to View Chart Preview Click for Info SNX4 [ENSG00000114520] Homo sapiens 1,011 uncertain 0.002 0.008
Click to View Chart Preview Click for Info SNX30 [ENSG00000148158] Homo sapiens 1,514 uncertain 4.43E-4 0.333
Click to View Chart Preview Click for Info SPCC1450.12 Schizosaccharomyces pombe 2,225 uncertain 0.004 0.144
Click to View Chart Preview Click for Info vps5 [SPCPJ732.01] Schizosaccharomyces pombe 2,249 uncertain 0.003 0.18
Click to View Chart Preview Click for Info YKR078W Saccharomyces cerevisiae 2,404 uncertain 0.002 1.536
Click to View Chart Preview Click for Info SNX41 [YDR425W] Saccharomyces cerevisiae 2,562 uncertain 0.162 0.032
Click to View Chart Preview Click for Info snx4 [SPAC6F6.12] Schizosaccharomyces pombe 2,640 uncertain 5.11E-4 1.568
Click to View Chart Preview Click for Info YPR097W Saccharomyces cerevisiae 2,749 uncertain 0.003 3.578
Click to View Chart Preview Click for Info SNX7 [ENSG00000162627] Homo sapiens 3,427 uncertain 0.425 0.01
Click to View Chart Preview Click for Info snx41 [SPBC14F5.11c] Schizosaccharomyces pombe 3,901 uncertain 4.332 14.86
Click to View Chart Preview Click for Info atg20 [SPCC16A11.08] Schizosaccharomyces pombe 4,004 uncertain 155.926 0.018
Click to View Chart Preview Click for Info VPS5 [YOR069W] Saccharomyces cerevisiae 4,245 uncertain 0.244 3.545
Click to View Chart Preview Click for Info vps17 [SPAPJ696.01c] Schizosaccharomyces pombe 4,264 uncertain 224.627 0.776
Click to View Chart Preview Click for Info SPBC1711.11 Schizosaccharomyces pombe 4,406 uncertain 12876.794 6.17E-5
Click to View Chart Preview Click for Info MVP1 [YMR004W] Saccharomyces cerevisiae 5,316 uncertain 5.882 3.231
Click to View Chart Preview Click for Info AT5g37050 Arabidopsis thaliana 5,395 uncertain 1.238 0.014
Click to View Chart Preview Click for Info SNX4 [YJL036W] Saccharomyces cerevisiae 5,632 uncertain 24.08 2.181
Click to View Chart Preview Click for Info At5g06140 Arabidopsis thaliana 5,746 uncertain 0.074 2.211
Click to View Chart Preview Click for Info At5g58440 Arabidopsis thaliana 20,792 uncertain 2.737 2.526

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

Click for more information

Graph of ATG20 (from probeset YDL113C).

Click to enlarge