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Saccharomyces cerevisiae

Cyclebase periodic rank: 231

Periodic


Gene Features:

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Degradation Signals:
  1. PEST

Analysis Results

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Combined Analysis (all experiments)

P(per)
= 5.765E-17
P(reg)
= 0.0032
Peaktime
= S (32%)

Combined Peaktime

Peaktime Chart
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Experiments


Orthologs and Paralogs:

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Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info PMT5 [YDL093W] Saccharomyces cerevisiae 189 S 1.23E-18 0.003
Periodic
Click to View Chart Preview Click for Info PMT3 [YOR321W] Saccharomyces cerevisiae 226 S 5.03E-17 0.003
Periodic
Click to View Chart Preview Click for Info PMT2 [YAL023C] Saccharomyces cerevisiae 279 S 3.06E-15 0.002
Periodic
Click to View Chart Preview Click for Info PMT4 [YJR143C] Saccharomyces cerevisiae 282 S 7.32E-14 5.92E-4
Periodic
Click to View Chart Preview Click for Info PMT7 [YDR307W] Saccharomyces cerevisiae 508 G1 1.46E-11 0.022
Periodic
Click to View Chart Preview Click for Info POMT1 [ENSG00000130714] Homo sapiens 1,425 uncertain 3.97E-5 2.709
Click to View Chart Preview Click for Info ogm2 [SPAPB1E7.09] Schizosaccharomyces pombe 1,934 uncertain 5.3E-8 1.835
Click to View Chart Preview Click for Info ogm1 [SPAC22A12.07c] Schizosaccharomyces pombe 1,950 uncertain 0.011 0.031
Click to View Chart Preview Click for Info ogm4 [SPBC16C6.09] Schizosaccharomyces pombe 3,169 uncertain 0.193 1.644
Click to View Chart Preview Click for Info PMT6 [YGR199W] Saccharomyces cerevisiae 5,034 uncertain 2.983 2.695
Click to View Chart Preview Click for Info POMT2 [ENSG00000009830] Homo sapiens 12,537 uncertain 2.701 0.858

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

Click for more information

Graph of PMT1 (from probeset YDL095W).

Click to enlarge