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Saccharomyces cerevisiae

Cyclebase periodic rank: 4,211



Gene Features:

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Degradation Signals:
  1. KENbox

Analysis Results

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Combined Analysis (all experiments)

P(per)
= 0.8537
P(reg)
= 0.917
Peaktime
uncertain [see possible reasons why]

Combined Peaktime

Peaktime Chart
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Experiments


Orthologs and Paralogs:

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Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info YNL134C Saccharomyces cerevisiae 406 M/G1 9.82E-8 5.9E-6
Periodic
Click to View Chart Preview Click for Info SPAC2E1P3.01 Schizosaccharomyces pombe 520 uncertain 4.49E-12 6.19E-4
Click to View Chart Preview Click for Info YIM1 [YMR152W] Saccharomyces cerevisiae 1,521 uncertain 2.83E-6 0.824
Click to View Chart Preview Click for Info AST1 [YBL069W] Saccharomyces cerevisiae 1,609 uncertain 0.002 0.09
Click to View Chart Preview Click for Info F18E5.200 [AT4G21580] Arabidopsis thaliana 1,780 uncertain 0.008 2.382
Click to View Chart Preview Click for Info SPBC16A3.02c Schizosaccharomyces pombe 3,127 uncertain 15.345 1.47E-4
Click to View Chart Preview Click for Info SPBC1773.06c Schizosaccharomyces pombe 3,498 uncertain 13.204 0.02
Click to View Chart Preview Click for Info SPBC337.11 Schizosaccharomyces pombe 3,985 uncertain 91.647 0.071
Click to View Chart Preview Click for Info YLR460C Saccharomyces cerevisiae 4,026 uncertain 0.309 1.516
Click to View Chart Preview Click for Info AST2 [YER101C] Saccharomyces cerevisiae 4,237 uncertain 0.254 3.356
Click to View Chart Preview Click for Info CRYZL1 [ENSG00000205758] Homo sapiens 8,388 uncertain 0.147 1.133
Click to View Chart Preview Click for Info T5P19_110 [AT3G56460] Arabidopsis thaliana 9,332 uncertain 0.232 1.624
Click to View Chart Preview Click for Info VAT1L [ENSG00000171724] Homo sapiens 12,166 uncertain 2.72 0.642
Click to View Chart Preview Click for Info CRYZ [ENSG00000116791] Homo sapiens 12,917 uncertain 1.57 2.088
Click to View Chart Preview Click for Info TP53I3 [ENSG00000115129] Homo sapiens 13,319 uncertain 1.559 3.192
Click to View Chart Preview Click for Info At1g23740 Arabidopsis thaliana 13,415 uncertain 0.963 1.017
Click to View Chart Preview Click for Info At3g15090 Arabidopsis thaliana 14,092 uncertain 0.573 2.344
Click to View Chart Preview Click for Info At4g13010 Arabidopsis thaliana 18,765 uncertain 1.786 2.118

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

Click for more information

Graph of YCR102C (from probeset YCR102C).

Click to enlarge