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Saccharomyces cerevisiae

Cyclebase periodic rank: 527

Periodic


Gene Features:

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Degradation Signals:
  1. KENbox
  2. PEST

Analysis Results

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Combined Analysis (all experiments)

P(per)
= 2.841E-7
P(reg)
= 7.451E-4
Peaktime
= M (80%)

Combined Peaktime

Peaktime Chart
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Experiments


Orthologs and Paralogs:

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Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info HMRA2 [YCR096C] Saccharomyces cerevisiae 538 uncertain 6.44E-7 6.49E-4
Periodic
Click to View Chart Preview Click for Info HMLALPHA2 [YCL067C] Saccharomyces cerevisiae 548 M 1.66E-6 4.26E-4
Periodic
Click to View Chart Preview Click for Info TGIF1 [ENSG00000177426] Homo sapiens 636 uncertain 2.48E-5 0.039
Click to View Chart Preview Click for Info CUP9 [YPL177C] Saccharomyces cerevisiae 1,082 uncertain 2.79E-4 0.02
Click to View Chart Preview Click for Info MEIS1 [ENSG00000143995] Homo sapiens 1,490 uncertain 0.056 0.002
Click to View Chart Preview Click for Info BLH11 [AT1G75430] Arabidopsis thaliana 2,255 uncertain 0.08 0.325
Click to View Chart Preview Click for Info AT4g32980 Arabidopsis thaliana 3,487 uncertain 0.997 8.63E-4
Click to View Chart Preview Click for Info TOS8 [YGL096W] Saccharomyces cerevisiae 3,634 uncertain 0.076 2.106
Click to View Chart Preview Click for Info BLH8 [AT2G27990] Arabidopsis thaliana 3,721 uncertain 0.399 0.099
Click to View Chart Preview Click for Info IRX2 [ENSG00000170561] Homo sapiens 4,563 uncertain 0.502 0.023
Click to View Chart Preview Click for Info BLH2 [AT4G36870] Arabidopsis thaliana 5,424 uncertain 1.015 0.039
Click to View Chart Preview Click for Info KNAT2 [AT1G70510] Arabidopsis thaliana 5,548 uncertain 1.04 0.04
Click to View Chart Preview Click for Info STM [AT1G62360] Arabidopsis thaliana 5,700 uncertain 1.461 0.009
Click to View Chart Preview Click for Info BLH3 [AT1G75410] Arabidopsis thaliana 6,244 uncertain 2.529 7.9E-4
Click to View Chart Preview Click for Info TGIF2 [ENSG00000118707] Homo sapiens 6,479 uncertain 0.022 2.227
Click to View Chart Preview Click for Info BLH1 [AT2G35940] Arabidopsis thaliana 6,647 uncertain 1.424 0.036
Click to View Chart Preview Click for Info BLH4 [AT2G23760] Arabidopsis thaliana 7,250 uncertain 2.632 0.003
Click to View Chart Preview Click for Info KNAT3 [AT5G25220] Arabidopsis thaliana 7,496 uncertain 0.136 1.819
Click to View Chart Preview Click for Info IRX3 [ENSG00000177508] Homo sapiens 8,564 uncertain 0.022 8.505
Click to View Chart Preview Click for Info BP [AT4G08150] Arabidopsis thaliana 9,211 uncertain 2.892 0.023
Click to View Chart Preview Click for Info BLH5 [AT2G27220] Arabidopsis thaliana 9,307 uncertain 2.898 0.026
Click to View Chart Preview Click for Info KNAT5 [AT4G32040] Arabidopsis thaliana 9,676 uncertain 0.207 2.056
Click to View Chart Preview Click for Info KNAT7 [AT1G62990] Arabidopsis thaliana 10,028 uncertain 1.291 0.238
Click to View Chart Preview Click for Info MEIS3P1 [ENSG00000105419] Homo sapiens 10,689 uncertain 0.58 1.158
Click to View Chart Preview Click for Info IRX1 [ENSG00000170549] Homo sapiens 10,793 uncertain 0.999 0.714
Click to View Chart Preview Click for Info PKNOX2 [ENSG00000165495] Homo sapiens 10,987 uncertain 0.425 1.915
Click to View Chart Preview Click for Info IRX5 [ENSG00000176842] Homo sapiens 12,209 uncertain 0.579 3.148
Click to View Chart Preview Click for Info BLH7 [AT2G16400] Arabidopsis thaliana 12,954 uncertain 0.684 1.336
Click to View Chart Preview Click for Info TGIF2LY [ENSG00000176679] Homo sapiens 13,072 uncertain 1.607 2.367
Click to View Chart Preview Click for Info KNAT4 [AT5G11060] Arabidopsis thaliana 14,368 uncertain 0.935 1.407
Click to View Chart Preview Click for Info BEL1 [AT5G41410] Arabidopsis thaliana 15,294 uncertain 1.025 1.647
Click to View Chart Preview Click for Info KNAT6 [AT1G23380] Arabidopsis thaliana 15,843 uncertain 1.223 1.539
Click to View Chart Preview Click for Info BLH10 [AT1G19700] Arabidopsis thaliana 16,755 uncertain 1.876 1.153
Click to View Chart Preview Click for Info BLH9 [AT5G02030] Arabidopsis thaliana 17,571 uncertain 1.331 2.211
Click to View Chart Preview Click for Info BLH6 [AT4G34610] Arabidopsis thaliana 18,780 uncertain 2.858 1.209

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

Click for more information

Graph of MATALPHA2 (from probeset YCR039C).

Click to enlarge