Cyclebase.org

Search Type:
  • Gene Name
  • BLAST
Example searches:

 

Saccharomyces cerevisiae

Cyclebase periodic rank: 228

Periodic


Analysis Results

[hide] [show]

Combined Analysis (all experiments)

P(per)
= 1.605E-7
P(reg)
= 9.712E-12
Peaktime
uncertain [see possible reasons why]

Combined Peaktime

Peaktime Chart
Loading Image
Error Loading Image!

Experiments


Orthologs and Paralogs:

[hide] [show]
Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info HXK2 [YGL253W] Saccharomyces cerevisiae 368 G1/S 4.27E-11 6.54E-4
Periodic
Click to View Chart Preview Click for Info EMI2 [YDR516C] Saccharomyces cerevisiae 486 G1 1.26E-7 4.07E-4
Periodic
Click to View Chart Preview Click for Info HXK1 [YFR053C] Saccharomyces cerevisiae 524 G1 6.17E-5 4.17E-6
Periodic
Click to View Chart Preview Click for Info YLR446W Saccharomyces cerevisiae 1,784 uncertain 2.49E-6 2.271
Click to View Chart Preview Click for Info At4g37840 Arabidopsis thaliana 1,793 uncertain 0.204 0.016
Click to View Chart Preview Click for Info hxk2 [SPAC4F8.07c] Schizosaccharomyces pombe 1,871 uncertain 2.04E-6 0.418
Click to View Chart Preview Click for Info hxk1 [SPAC24H6.04] Schizosaccharomyces pombe 2,948 uncertain 0.223 0.652
Click to View Chart Preview Click for Info HK2 [ENSG00000159399] Homo sapiens 5,421 uncertain 0.122 0.19
Click to View Chart Preview Click for Info HK1-tb [ENSG00000156515] Homo sapiens 10,732 uncertain 0.169 4.05
Click to View Chart Preview Click for Info HXK2 [AT2G19860] Arabidopsis thaliana 15,196 uncertain 0.889 1.897
Click to View Chart Preview Click for Info HXK1 [AT4G29130] Arabidopsis thaliana 18,407 uncertain 1.477 2.436
Click to View Chart Preview Click for Info At1g50460 Arabidopsis thaliana 19,880 uncertain 2.796 1.692
Click to View Chart Preview Click for Info At1g47840 Arabidopsis thaliana 20,773 uncertain 2.966 2.272
Click to View Chart Preview Click for Info At3g20040 Arabidopsis thaliana 20,882 uncertain 2.864 2.544

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

Click for more information

Graph of GLK1 (from probeset YCL040W).

Click to enlarge