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Saccharomyces cerevisiae

Cyclebase periodic rank: 136

Periodic


Analysis Results

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Combined Analysis (all experiments)

P(per)
= 7.127E-19
P(reg)
= 1.175E-4
Peaktime
= S (45%)

Combined Peaktime

Peaktime Chart
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Experiments


Orthologs and Paralogs:

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Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info gpt2 [SPBC15D4.04] Schizosaccharomyces pombe 3,984 uncertain 22.67 4.531
Click to View Chart Preview Click for Info DPAGT1 [ENSG00000172269] Homo sapiens 9,950 uncertain 0.213 1.97
Click to View Chart Preview Click for Info At2g41490 Arabidopsis thaliana 13,835 uncertain 0.57 2.196
Click to View Chart Preview Click for Info At3g57220 Arabidopsis thaliana 20,030 uncertain 2.7 1.845

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

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Graph of ALG7 (from probeset YBR243C).

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