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[Viewing data for 'Spellman-cdc15' only. See combined data for PDB1]

Saccharomyces cerevisiae

Cyclebase periodic rank: 2,627



Analysis Results

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Analysis Results of 'Spellman-cdc15'

P(per)
= 1.444
P(reg)
= 1
Peaktime
uncertain [see possible reasons why]

Peaktime

Peaktime Chart
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Orthologs and Paralogs:

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Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info pdb1 [SPBC30D10.13c] Schizosaccharomyces pombe 2,034 uncertain 0.001 0.097
Click to View Chart Preview Click for Info PDHB [ENSG00000168291] Homo sapiens 4,985 uncertain 0.004 4.457
Click to View Chart Preview Click for Info At2g34590 Arabidopsis thaliana 6,663 uncertain 0.087 2.468
Click to View Chart Preview Click for Info At1g30120 Arabidopsis thaliana 15,229 uncertain 0.755 2.333
Click to View Chart Preview Click for Info PDH2 [AT5G50850] Arabidopsis thaliana 16,753 uncertain 1.04 2.343

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

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Graph of PDB1 (from probeset YBR221C).

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