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Saccharomyces cerevisiae

Cyclebase periodic rank: 1,494



Gene Features:

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Degradation Signals:
  1. KENbox
  2. PEST

Analysis Results

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Combined Analysis (all experiments)

P(per)
= 0.1229
P(reg)
= 4.828E-4
Peaktime
uncertain [see possible reasons why]

Combined Peaktime

Peaktime Chart
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Experiments


Orthologs and Paralogs:

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Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info CAC2 [AT5G35360] Arabidopsis thaliana 528 uncertain 0.002 0.594
Click to View Chart Preview Click for Info T2I1_70 [AT5G07360] Arabidopsis thaliana 1,029 uncertain 0.005 1.1
Click to View Chart Preview Click for Info At3g25660 Arabidopsis thaliana 1,039 uncertain 0.001 2.25
Click to View Chart Preview Click for Info SPBC646.03 Schizosaccharomyces pombe 1,131 uncertain 1.18E-10 0.162
Click to View Chart Preview Click for Info QRSL1 [ENSG00000130348] Homo sapiens 2,742 uncertain 8.53E-4 2.014
Click to View Chart Preview Click for Info HER2 [YMR293C] Saccharomyces cerevisiae 3,195 uncertain 0.015 2.946
Click to View Chart Preview Click for Info SPAC869.01 Schizosaccharomyces pombe 4,156 uncertain 789.563 0.002
Click to View Chart Preview Click for Info At1g08980 Arabidopsis thaliana 7,030 uncertain 0.585 0.262
Click to View Chart Preview Click for Info MCCA [AT1G03090] Arabidopsis thaliana 7,624 uncertain 2.789 0.003
Click to View Chart Preview Click for Info PCCA [ENSG00000175198] Homo sapiens 8,108 uncertain 0.027 5.271
Click to View Chart Preview Click for Info T5E8_220 [AT5G09420] Arabidopsis thaliana 10,254 uncertain 1.409 0.23
Click to View Chart Preview Click for Info T11I11.120 [AT4G34880] Arabidopsis thaliana 12,006 uncertain 0.988 0.644
Click to View Chart Preview Click for Info MCCC1 [ENSG00000078070] Homo sapiens 12,727 uncertain 2.188 1.245
Click to View Chart Preview Click for Info At3g17970 Arabidopsis thaliana 17,959 uncertain 2.567 1.113
Click to View Chart Preview Click for Info At5g64440 Arabidopsis thaliana 20,102 uncertain 2.223 2.393

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

Click for more information

Graph of DUR1,2 (from probeset YBR208C).

Click to enlarge