Cyclebase.org

Search Type:
  • Gene Name
  • BLAST
Example searches:

 

Saccharomyces cerevisiae

Cyclebase periodic rank: 2,472



Gene Features:

[hide] [show]
Degradation Signals:
  1. Dbox

Analysis Results

[hide] [show]

Combined Analysis (all experiments)

P(per)
= 5.89
P(reg)
= 2.647E-4
Peaktime
uncertain [see possible reasons why]

Combined Peaktime

Peaktime Chart
Loading Image
Error Loading Image!

Experiments


Orthologs and Paralogs:

[hide] [show]
Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info rps6b [SPAPB1E7.12] Schizosaccharomyces pombe 1,024 uncertain 2.56E-10 0.056
Click to View Chart Preview Click for Info RPS6A [YPL090C] Saccharomyces cerevisiae 2,058 uncertain 0.362 0.002
Click to View Chart Preview Click for Info rps6a [SPAC13G6.07c] Schizosaccharomyces pombe 3,725 uncertain 10.371 0.709
Click to View Chart Preview Click for Info RPS6A [AT4G31700] Arabidopsis thaliana 5,684 uncertain 0.18 0.753
Click to View Chart Preview Click for Info KIAA1931 [ENSG00000146067] Homo sapiens 10,294 uncertain 0.225 2.306
Click to View Chart Preview Click for Info RPS6B [AT5G10360] Arabidopsis thaliana 11,896 uncertain 0.663 1.01

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

Click for more information

Graph of RPS6B (from probeset YBR181C).

Click to enlarge