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Saccharomyces cerevisiae

Cyclebase periodic rank: 4,338



Analysis Results

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Combined Analysis (all experiments)

P(per)
= 9.96
P(reg)
= 0.1073
Peaktime
uncertain [see possible reasons why]

Combined Peaktime

Peaktime Chart
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Experiments


Orthologs and Paralogs:

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Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info GRS2 [YPR081C] Saccharomyces cerevisiae 2,191 uncertain 8.06E-4 1.2
Click to View Chart Preview Click for Info SPAC3F10.03 Schizosaccharomyces pombe 2,847 uncertain 1.65E-4 4.859
Click to View Chart Preview Click for Info GARS [ENSG00000106105] Homo sapiens 5,009 uncertain 2.855 0.006
Click to View Chart Preview Click for Info HP55 [ENSG00000136480] Homo sapiens 10,796 uncertain 1.769 0.405
Click to View Chart Preview Click for Info GLYRS-1 [AT1G29880] Arabidopsis thaliana 12,350 uncertain 2.139 0.273
Click to View Chart Preview Click for Info T32N15.9 [AT3G44740] Arabidopsis thaliana 19,289 uncertain 2.384 1.713
Click to View Chart Preview Click for Info At1g29870 Arabidopsis thaliana 19,453 uncertain 2.644 1.581

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

Click for more information

Graph of GRS1 (from probeset YBR121C).

Click to enlarge