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Saccharomyces cerevisiae

Cyclebase periodic rank: 2,293



Analysis Results

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Other Probesets...

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Warning: multiple probesets target this gene. Displaying analysis results for probeset 'YBR090C-A'.

Combined Analysis (all experiments)

P(per)
= 0.0102
P(reg)
= 0.1917
Peaktime
uncertain [see possible reasons why]

Combined Peaktime

Peaktime Chart
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Experiments


Orthologs and Paralogs:

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Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info AT5g23420 Arabidopsis thaliana 4 S 3.4E-5 6.28E-4
Periodic
Click to View Chart Preview Click for Info F9D16.270 [AT4G23800] Arabidopsis thaliana 7 G1 3.87E-4 3.17E-5
Periodic
Click to View Chart Preview Click for Info SPBC28F2.11 Schizosaccharomyces pombe 104 G1/S 9.59E-33 4.79E-7
Periodic
Click to View Chart Preview Click for Info nhp6 [SPAC57A10.09c] Schizosaccharomyces pombe 201 S 3.76E-21 1.15E-5
Periodic
Click to View Chart Preview Click for Info HMGB3 [ENSG00000029993] Homo sapiens 208 M 1.02E-9 0.019
Periodic
Click to View Chart Preview Click for Info AT4g11080 Arabidopsis thaliana 506 uncertain 0.042 0.003
Click to View Chart Preview Click for Info NHP6A [YPR052C] Saccharomyces cerevisiae 703 uncertain 3.29E-6 0.004
Click to View Chart Preview Click for Info IXR1 [YKL032C] Saccharomyces cerevisiae 744 uncertain 2.01E-4 0.001
Click to View Chart Preview Click for Info At1g20696 Arabidopsis thaliana 747 uncertain 0.008 0.48
Click to View Chart Preview Click for Info ABF2 [YMR072W] Saccharomyces cerevisiae 901 uncertain 0.005 3.79E-4
Click to View Chart Preview Click for Info HMGbeta1 [AT1G20693] Arabidopsis thaliana 1,365 uncertain 0.007 1.598
Click to View Chart Preview Click for Info At1g04880 Arabidopsis thaliana 1,391 uncertain 0.008 1.428
Click to View Chart Preview Click for Info cmb1 [SPAC4G9.11c] Schizosaccharomyces pombe 1,754 uncertain 7.84E-6 0.147
Click to View Chart Preview Click for Info HMO1 [YDR174W] Saccharomyces cerevisiae 2,302 uncertain 0.259 0.008
Click to View Chart Preview Click for Info NHP10 [YDL002C] Saccharomyces cerevisiae 3,359 uncertain 0.037 1.996
Click to View Chart Preview Click for Info HMGdelta [AT4G35570] Arabidopsis thaliana 5,409 uncertain 0.062 2.446
Click to View Chart Preview Click for Info At2g34450 Arabidopsis thaliana 6,001 uncertain 0.118 1.387
Click to View Chart Preview Click for Info At1g76110 Arabidopsis thaliana 7,667 uncertain 1.238 0.105
Click to View Chart Preview Click for Info HMGgamma [AT2G17560] Arabidopsis thaliana 8,287 uncertain 0.44 0.559
Click to View Chart Preview Click for Info HMGX1 [ENSG00000140382] Homo sapiens 11,523 uncertain 0.508 2.277
Click to View Chart Preview Click for Info UBTF [ENSG00000108312] Homo sapiens 12,087 uncertain 0.292 5.656
Click to View Chart Preview Click for Info TOX2 [ENSG00000124191] Homo sapiens 13,378 uncertain 2.924 1.804
Click to View Chart Preview Click for Info HMGalpha [AT3G51880] Arabidopsis thaliana 16,850 uncertain 1.022 2.481
Click to View Chart Preview Click for Info At3g13350 Arabidopsis thaliana 18,073 uncertain 1.529 2.132

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

Click for more information

Graph of NHP6B (from probeset YBR090C-A).

Click to enlarge