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Saccharomyces cerevisiae

Cyclebase periodic rank: 595

Periodic


Analysis Results

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Combined Analysis (all experiments)

P(per)
= 5.852E-5
P(reg)
= 8.907E-5
Peaktime
= G1 (10%)

Combined Peaktime

Peaktime Chart
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Experiments


Orthologs and Paralogs:

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Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info At2g29500 Arabidopsis thaliana 76 S 0.001 0.009
Periodic
Click to View Chart Preview Click for Info HSP17.6II [AT5G12020] Arabidopsis thaliana 124 S 0.008 5.18E-4
Periodic
Click to View Chart Preview Click for Info hsp16 [SPBC3E7.02c] Schizosaccharomyces pombe 322 uncertain 0.002 1.02E-17
Periodic
Click to View Chart Preview Click for Info HSP42 [YDR171W] Saccharomyces cerevisiae 665 uncertain 0.001 3.38E-5
Click to View Chart Preview Click for Info At1g52560 Arabidopsis thaliana 1,125 uncertain 0.139 0.002
Click to View Chart Preview Click for Info HSP23.6 [AT4G25200] Arabidopsis thaliana 1,555 uncertain 0.22 0.003
Click to View Chart Preview Click for Info At1g59860 Arabidopsis thaliana 2,232 uncertain 0.232 0.047
Click to View Chart Preview Click for Info AT1g06460 Arabidopsis thaliana 3,111 uncertain 0.418 0.041
Click to View Chart Preview Click for Info HSP17.6A [AT5G12030] Arabidopsis thaliana 3,216 uncertain 0.892 7.81E-4
Click to View Chart Preview Click for Info At5g51440 Arabidopsis thaliana 3,317 uncertain 0.659 0.006
Click to View Chart Preview Click for Info At1g76770 Arabidopsis thaliana 3,483 uncertain 0.7 0.007
Click to View Chart Preview Click for Info SPCC338.06c Schizosaccharomyces pombe 3,650 uncertain 323.462 7.73E-6
Click to View Chart Preview Click for Info HSP18.2 [AT5G59720] Arabidopsis thaliana 5,832 uncertain 0.245 0.543
Click to View Chart Preview Click for Info AT4g21870 Arabidopsis thaliana 6,149 uncertain 0.929 0.088
Click to View Chart Preview Click for Info At2g27140 Arabidopsis thaliana 6,163 uncertain 1.347 0.027
Click to View Chart Preview Click for Info HSP17.6 [AT1G53540] Arabidopsis thaliana 8,122 uncertain 0.492 0.463
Click to View Chart Preview Click for Info At2g19310 Arabidopsis thaliana 8,445 uncertain 2.743 0.012
Click to View Chart Preview Click for Info F15I1.13 [AT1G54050] Arabidopsis thaliana 9,240 uncertain 2.015 0.083
Click to View Chart Preview Click for Info RTM2 [AT5G04890] Arabidopsis thaliana 10,407 uncertain 0.334 1.456
Click to View Chart Preview Click for Info F13M14.3 [AT3G10680] Arabidopsis thaliana 11,420 uncertain 1.703 0.267
Click to View Chart Preview Click for Info AT5g37670 Arabidopsis thaliana 14,136 uncertain 1.031 1.17
Click to View Chart Preview Click for Info HSP21 [AT4G27670] Arabidopsis thaliana 18,259 uncertain 2.604 1.182
Click to View Chart Preview Click for Info AT4g10250 Arabidopsis thaliana 19,105 uncertain 2.92 1.279

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

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Graph of HSP26 (from probeset YBR072W).

Click to enlarge