Cyclebase.org

Search Type:
  • Gene Name
  • BLAST
Example searches:

 

Saccharomyces cerevisiae

Cyclebase periodic rank: 3,836



Analysis Results

[hide] [show]

Combined Analysis (all experiments)

P(per)
= 83.89
P(reg)
= 0.0032
Peaktime
uncertain [see possible reasons why]

Combined Peaktime

Peaktime Chart
Loading Image
Error Loading Image!

Experiments


Orthologs and Paralogs:

[hide] [show]
Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info SPBC365.14c Schizosaccharomyces pombe 126 G2 7.59E-32 4.82E-4
Periodic
Click to View Chart Preview Click for Info GAE6 [AT3G23820] Arabidopsis thaliana 1,002 uncertain 0.03 0.224
Click to View Chart Preview Click for Info F16M19.8 [AT1G63180] Arabidopsis thaliana 1,383 uncertain 0.539 4.07E-6
Click to View Chart Preview Click for Info GALE [ENSG00000117308] Homo sapiens 2,138 uncertain 0.017 0.038
Click to View Chart Preview Click for Info gal10 [SPBPB2B2.12c] Schizosaccharomyces pombe 3,000 uncertain 72.1 3.6E-7
Click to View Chart Preview Click for Info T22N4.11 [AT3G01260] Arabidopsis thaliana 3,253 uncertain 0.935 6.66E-4
Click to View Chart Preview Click for Info YNR071C Saccharomyces cerevisiae 3,271 uncertain 54.78 7.07E-4
Click to View Chart Preview Click for Info At1g12780 Arabidopsis thaliana 3,572 uncertain 1.121 5.46E-4
Click to View Chart Preview Click for Info At4g10960 Arabidopsis thaliana 3,759 uncertain 0.656 0.02
Click to View Chart Preview Click for Info GAE3 [AT4G00110] Arabidopsis thaliana 4,066 uncertain 0.057 1.626
Click to View Chart Preview Click for Info GAE5 [AT4G12250] Arabidopsis thaliana 4,756 uncertain 0.102 1.066
Click to View Chart Preview Click for Info YHR210C Saccharomyces cerevisiae 5,162 uncertain 6.218 1.977
Click to View Chart Preview Click for Info At4g20460 Arabidopsis thaliana 7,001 uncertain 2.068 0.008
Click to View Chart Preview Click for Info At2g34850 Arabidopsis thaliana 7,987 uncertain 2.211 0.022
Click to View Chart Preview Click for Info F8M21_30 [AT5G15140] Arabidopsis thaliana 8,519 uncertain 2.653 0.016
Click to View Chart Preview Click for Info At5g44480 Arabidopsis thaliana 9,556 uncertain 2.83 0.037
Click to View Chart Preview Click for Info GAE1 [AT4G30440] Arabidopsis thaliana 10,779 uncertain 1.344 0.293
Click to View Chart Preview Click for Info GAE4 [AT2G45310] Arabidopsis thaliana 16,223 uncertain 2.616 0.67
Click to View Chart Preview Click for Info At3g28530 [AT4G23920] Arabidopsis thaliana 17,170 uncertain 1.294 2.04
Click to View Chart Preview Click for Info GAE2 [AT1G02000] Arabidopsis thaliana 17,422 uncertain 1.303 2.17
Click to View Chart Preview Click for Info SQD1 [AT4G33030] Arabidopsis thaliana 17,632 uncertain 1.387 2.134
Click to View Chart Preview Click for Info At3g17940 Arabidopsis thaliana 19,243 uncertain 2.381 1.696
Click to View Chart Preview Click for Info MUR4 [AT1G30620] Arabidopsis thaliana 19,980 uncertain 2.91 1.657
Click to View Chart Preview Click for Info At1g64440 Arabidopsis thaliana 20,621 uncertain 2.768 2.282

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

Click for more information

Graph of GAL10 (from probeset YBR019C).

Click to enlarge