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Saccharomyces cerevisiae

Cyclebase periodic rank: 5

Periodic


Analysis Results

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Combined Analysis (all experiments)

P(per)
= 1.077E-24
P(reg)
= 2.271E-13
Peaktime
= S (40%)

Combined Peaktime

Peaktime Chart
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Experiments


Orthologs and Paralogs:

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Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info HTB1 [YDR224C] Saccharomyces cerevisiae 10 S 7.36E-24 1.3E-12
Periodic
Click to View Chart Preview Click for Info htb1 [SPCC622.09] Schizosaccharomyces pombe 19 G1/S 2.73E-46 1.47E-21
Periodic
Click to View Chart Preview Click for Info At3g46030 Arabidopsis thaliana 77 S 2.45E-4 0.082
Periodic
Click to View Chart Preview Click for Info At2g37470 Arabidopsis thaliana 85 S 7.68E-4 0.026
Periodic
Click to View Chart Preview Click for Info H2B [AT3G45980] Arabidopsis thaliana 112 S 1.08E-4 0.203
Periodic
Click to View Chart Preview Click for Info At3g09480 Arabidopsis thaliana 224 S 0.008 0.022
Periodic
Click to View Chart Preview Click for Info At3g53650 Arabidopsis thaliana 227 S 0.003 0.107
Periodic
Click to View Chart Preview Click for Info At5g22880 Arabidopsis thaliana 295 S 0.013 0.021
Periodic
Click to View Chart Preview Click for Info At5g59910 Arabidopsis thaliana 318 S 0.001 0.304
Periodic
Click to View Chart Preview Click for Info At1g07790 Arabidopsis thaliana 415 uncertain 6.72E-4 0.594
Click to View Chart Preview Click for Info HIST2H2BA [ENSG00000158373] Homo sapiens 557 S 0.112 3.12E-6
Periodic
Click to View Chart Preview Click for Info At5g02570 Arabidopsis thaliana 694 uncertain 0.13 5.88E-5
Click to View Chart Preview Click for Info ENSG00000021826 Homo sapiens 746 uncertain 0.232 1.39E-5
Click to View Chart Preview Click for Info OR2B2 [ENSG00000168131] Homo sapiens 747 uncertain 0.232 1.39E-5
Click to View Chart Preview Click for Info HIST1H2BO [ENSG00000196331] Homo sapiens 748 uncertain 0.232 1.39E-5
Click to View Chart Preview Click for Info HIST1H2BC [ENSG00000180596] Homo sapiens 1,424 uncertain 0.125 8.59E-4
Click to View Chart Preview Click for Info RRP15 [ENSG00000067533] Homo sapiens 1,946 uncertain 0.137 0.003
Click to View Chart Preview Click for Info PIK3C2B [ENSG00000133056] Homo sapiens 1,947 uncertain 0.137 0.003
Click to View Chart Preview Click for Info NDUFC2 [ENSG00000151366] Homo sapiens 1,948 uncertain 0.137 0.003
Click to View Chart Preview Click for Info OMA1 [ENSG00000162600] Homo sapiens 1,949 uncertain 0.137 0.003
Click to View Chart Preview Click for Info SGCB [ENSG00000163069] Homo sapiens 1,950 uncertain 0.137 0.003
Click to View Chart Preview Click for Info C11orf17 [ENSG00000166452] Homo sapiens 1,951 uncertain 0.137 0.003
Click to View Chart Preview Click for Info HIST3H2BB [ENSG00000197435] Homo sapiens 1,952 uncertain 0.137 0.003
Click to View Chart Preview Click for Info HIST1H2BF [ENSG00000197846] Homo sapiens 2,006 uncertain 2.468 2.05E-4
Click to View Chart Preview Click for Info HIST1H2BL [ENSG00000185130] Homo sapiens 3,546 uncertain 0.38 0.012
Click to View Chart Preview Click for Info At2g28720 Arabidopsis thaliana 3,893 uncertain 0.108 0.681
Click to View Chart Preview Click for Info HIST1H2BK [ENSG00000197903] Homo sapiens 4,712 uncertain 0.967 0.014
Click to View Chart Preview Click for Info HIST1H2BJ [ENSG00000124635] Homo sapiens 4,719 uncertain 1.196 0.011
Click to View Chart Preview Click for Info At1g08170 Arabidopsis thaliana 8,419 uncertain 2.362 0.025
Click to View Chart Preview Click for Info HIST1H2BA [ENSG00000146047] Homo sapiens 10,140 uncertain 0.365 1.287

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

Click for more information

Graph of HTB2 (from probeset YBL002W).

Click to enlarge