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Saccharomyces cerevisiae

Cyclebase periodic rank: 2,957



Analysis Results

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Combined Analysis (all experiments)

P(per)
= 10.25
P(reg)
= 0.002
Peaktime
uncertain [see possible reasons why]

Combined Peaktime

Peaktime Chart
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Experiments


Orthologs and Paralogs:

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Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info SOR2 [YDL246C] Saccharomyces cerevisiae 1,583 uncertain 0.378 6.43E-5
Click to View Chart Preview Click for Info At5g51970 Arabidopsis thaliana 1,715 uncertain 0.087 0.153
Click to View Chart Preview Click for Info BDH2 [YAL061W] Saccharomyces cerevisiae 3,445 uncertain 6.949 0.013
Click to View Chart Preview Click for Info SPBC1198.01 Schizosaccharomyces pombe 4,828 uncertain 329131.533 0.003
Click to View Chart Preview Click for Info tms1 [SPBC1773.05c] Schizosaccharomyces pombe 4,921 uncertain 2155905.667 0.016
Click to View Chart Preview Click for Info XYL2 [YLR070C] Saccharomyces cerevisiae 5,272 uncertain 4.151 4.097
Click to View Chart Preview Click for Info SOR1 [YJR159W] Saccharomyces cerevisiae 5,839 uncertain 135 1.075

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

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Graph of BDH1 (from probeset YAL060W).

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