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Saccharomyces cerevisiae

Cyclebase periodic rank: 2,711



Gene Features:

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Degradation Signals:
  1. KENbox

Analysis Results

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Combined Analysis (all experiments)

P(per)
= 3.901
P(reg)
= 0.0022
Peaktime
uncertain [see possible reasons why]

Combined Peaktime

Peaktime Chart
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Experiments


Orthologs and Paralogs:

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Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info MET17 [YLR303W] Saccharomyces cerevisiae 432 S 5.9E-4 2.86E-9
Periodic
Click to View Chart Preview Click for Info AT1g64660 Arabidopsis thaliana 445 uncertain 0.027 0.011
Click to View Chart Preview Click for Info SPAC23A1.14c Schizosaccharomyces pombe 537 uncertain 1.2E-10 7.84E-5
Click to View Chart Preview Click for Info SPBC428.11 Schizosaccharomyces pombe 746 uncertain 3.46E-7 6.2E-5
Click to View Chart Preview Click for Info STR3 [YGL184C] Saccharomyces cerevisiae 910 uncertain 0.138 2.55E-8
Click to View Chart Preview Click for Info YLL058W Saccharomyces cerevisiae 2,295 uncertain 0.004 0.512
Click to View Chart Preview Click for Info YHR112C Saccharomyces cerevisiae 2,665 uncertain 0.009 0.823
Click to View Chart Preview Click for Info YML082W Saccharomyces cerevisiae 3,122 uncertain 0.014 2.616
Click to View Chart Preview Click for Info SPCC61.06 Schizosaccharomyces pombe 3,144 uncertain 3.596 0.014
Click to View Chart Preview Click for Info SPBC15D4.09c Schizosaccharomyces pombe 3,689 uncertain 6.704 1.403
Click to View Chart Preview Click for Info IRC7 [YFR055W] Saccharomyces cerevisiae 4,635 uncertain 54.88 0.045
Click to View Chart Preview Click for Info STR2 [YJR130C] Saccharomyces cerevisiae 4,820 uncertain 41.15 0.107
Click to View Chart Preview Click for Info CGS1 [AT3G01120] Arabidopsis thaliana 6,770 uncertain 0.13 1.567
Click to View Chart Preview Click for Info F10C21.1 [AT1G33320] Arabidopsis thaliana 7,074 uncertain 1.824 0.018
Click to View Chart Preview Click for Info At3g57050 Arabidopsis thaliana 18,617 uncertain 1.65 2.245

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

Click for more information

Graph of CYS3 (from probeset YAL012W).

Click to enlarge