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Schizosaccharomyces pombe

Cyclebase periodic rank: 998



Analysis Results

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Combined Analysis (all experiments)

P(per)
= 9.336E-14
P(reg)
= 0.6319
Peaktime
uncertain [see possible reasons why]

Combined Peaktime

Peaktime Chart
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Experiments


Orthologs and Paralogs:

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Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info SDS24 [YBR214W] Saccharomyces cerevisiae 1,158 uncertain 0.044 9.62E-5
Click to View Chart Preview Click for Info KING1 [AT3G48530] Arabidopsis thaliana 1,842 uncertain 0.195 0.027
Click to View Chart Preview Click for Info SPAC1556.08c [SPAC1F12.01c] Schizosaccharomyces pombe 2,799 uncertain 1.1E-4 4.756
Click to View Chart Preview Click for Info SNF4 [YGL115W] Saccharomyces cerevisiae 5,488 uncertain 7.53 4.22
Click to View Chart Preview Click for Info SDS23 [YGL056C] Saccharomyces cerevisiae 5,765 uncertain 34.23 2.772
Click to View Chart Preview Click for Info At4g27460 Arabidopsis thaliana 6,087 uncertain 2 0.003
Click to View Chart Preview Click for Info PRKAG3 [ENSG00000115592] Homo sapiens 10,621 uncertain 2.144 0.301
Click to View Chart Preview Click for Info F18B13.17 [AT1G80090] Arabidopsis thaliana 11,465 uncertain 2.653 0.143
Click to View Chart Preview Click for Info At1g69800 Arabidopsis thaliana 15,816 uncertain 0.867 2.311
Click to View Chart Preview Click for Info At1g15330 Arabidopsis thaliana 16,110 uncertain 0.991 2.109
Click to View Chart Preview Click for Info At1g09020 Arabidopsis thaliana 16,968 uncertain 1.127 2.274

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

Click for more information

Graph of sds23 (from probeset SPBC646.13).

Click to enlarge