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Schizosaccharomyces pombe

Cyclebase periodic rank: 702



Analysis Results

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Combined Analysis (all experiments)

P(per)
= 2.841E-5
P(reg)
= 1.993E-7
Peaktime
uncertain [see possible reasons why]

Combined Peaktime

Peaktime Chart
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Experiments


Orthologs and Paralogs:

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Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info SPCC965.06 Schizosaccharomyces pombe 113 G1 2.9E-29 1.73E-9
Periodic
Click to View Chart Preview Click for Info plr1 [SPAC9E9.11] Schizosaccharomyces pombe 371 G2 1.98E-9 2.44E-9
Periodic
Click to View Chart Preview Click for Info AAD10 [YJR155W] Saccharomyces cerevisiae 1,413 uncertain 2.14E-4 0.121
Click to View Chart Preview Click for Info SPAC977.14c Schizosaccharomyces pombe 1,540 uncertain 0.094 1.15E-6
Click to View Chart Preview Click for Info KV-beta1 [AT1G04690] Arabidopsis thaliana 1,627 uncertain 0.007 2.06
Click to View Chart Preview Click for Info YPL088W Saccharomyces cerevisiae 1,799 uncertain 2.093 3.62E-6
Click to View Chart Preview Click for Info yakc [SPAC1F7.12] Schizosaccharomyces pombe 1,804 uncertain 5.92E-5 0.096
Click to View Chart Preview Click for Info AAD4 [YDL243C] Saccharomyces cerevisiae 2,040 uncertain 1.305 2.13E-4
Click to View Chart Preview Click for Info YPR127W Saccharomyces cerevisiae 2,531 uncertain 0.003 1.506
Click to View Chart Preview Click for Info AAD14 [YNL331C] Saccharomyces cerevisiae 2,688 uncertain 0.025 0.323
Click to View Chart Preview Click for Info SPCC1281.04 Schizosaccharomyces pombe 3,011 uncertain 58.131 7.3E-7
Click to View Chart Preview Click for Info AAD3 [YCR107W] Saccharomyces cerevisiae 3,085 uncertain 0.156 0.212
Click to View Chart Preview Click for Info F8A5.20 [AT1G60680] Arabidopsis thaliana 3,162 uncertain 0.731 0.002
Click to View Chart Preview Click for Info AAD16 [YFL057C] Saccharomyces cerevisiae 3,213 uncertain 0.139 0.331
Click to View Chart Preview Click for Info SPAC3A11.11c Schizosaccharomyces pombe 3,561 uncertain 4.723 0.914
Click to View Chart Preview Click for Info KCNAB3 [ENSG00000170049] Homo sapiens 3,927 uncertain 0.116 0.058
Click to View Chart Preview Click for Info At1g04420 Arabidopsis thaliana 4,310 uncertain 0.461 0.119
Click to View Chart Preview Click for Info AAD6 [YFL056C] Saccharomyces cerevisiae 4,401 uncertain 0.546 2.443
Click to View Chart Preview Click for Info At1g60710 Arabidopsis thaliana 4,501 uncertain 0.076 1.37
Click to View Chart Preview Click for Info AAD15 [YOL165C] Saccharomyces cerevisiae 5,681 uncertain 41.19 1.559
Click to View Chart Preview Click for Info T16B5.5 [AT1G10810] Arabidopsis thaliana 5,843 uncertain 1.684 0.005
Click to View Chart Preview Click for Info At5g53580 Arabidopsis thaliana 12,584 uncertain 1.183 0.619
Click to View Chart Preview Click for Info F8A5.24 [AT1G60730] Arabidopsis thaliana 12,927 uncertain 0.892 0.963
Click to View Chart Preview Click for Info At1g60690 Arabidopsis thaliana 13,701 uncertain 0.653 1.775
Click to View Chart Preview Click for Info At2g27680 Arabidopsis thaliana 18,782 uncertain 1.954 1.911
Click to View Chart Preview Click for Info At1g06690 Arabidopsis thaliana 20,222 uncertain 2.285 2.426

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

Click for more information

Graph of SPBC215.11c (from probeset SPBC215.11c).

Click to enlarge