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Schizosaccharomyces pombe

Cyclebase periodic rank: 4,592



Analysis Results

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Combined Analysis (all experiments)

P(per)
= 8693.67
P(reg)
= 0.0142
Peaktime
uncertain [see possible reasons why]

Combined Peaktime

Peaktime Chart
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Experiments


Orthologs and Paralogs:

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Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info TPO1 [YLL028W] Saccharomyces cerevisiae 101 G2/M 1.44E-15 2.71E-9
Periodic
Click to View Chart Preview Click for Info SPBC1271.10c Schizosaccharomyces pombe 191 G2 3.61E-21 8.03E-7
Periodic
Click to View Chart Preview Click for Info TPO4 [YOR273C] Saccharomyces cerevisiae 241 M 1.34E-11 3.31E-7
Periodic
Click to View Chart Preview Click for Info SV2B [ENSG00000185518] Homo sapiens 316 uncertain 1.15E-5 1.34E-4
Periodic
Click to View Chart Preview Click for Info TPO3 [YPR156C] Saccharomyces cerevisiae 450 G2 1.99E-7 3.14E-5
Periodic
Click to View Chart Preview Click for Info SPBC1348.05 Schizosaccharomyces pombe 516 uncertain 1.13E-6 2.82E-9
Click to View Chart Preview Click for Info FLR1 [YBR008C] Saccharomyces cerevisiae 529 S 1.91E-12 0.058
Periodic
Click to View Chart Preview Click for Info TPO2 [YGR138C] Saccharomyces cerevisiae 628 uncertain 7.94E-4 1.53E-5
Click to View Chart Preview Click for Info At1g73220 Arabidopsis thaliana 629 uncertain 0.013 0.233
Click to View Chart Preview Click for Info QDR3 [YBR043C] Saccharomyces cerevisiae 1,135 uncertain 4.91E-8 0.481
Click to View Chart Preview Click for Info HOL1 [YNR055C] Saccharomyces cerevisiae 1,441 uncertain 1.19E-7 1.738
Click to View Chart Preview Click for Info SPCC794.14 [SPCC1529.01] Schizosaccharomyces pombe 1,458 uncertain 8.3E-6 0.032
Click to View Chart Preview Click for Info SPBC409.08 Schizosaccharomyces pombe 1,499 uncertain 1.324 2.13E-10
Click to View Chart Preview Click for Info SPCC965.13 Schizosaccharomyces pombe 1,502 uncertain 4.07E-4 0.011
Click to View Chart Preview Click for Info AQR1 [YNL065W] Saccharomyces cerevisiae 1,781 uncertain 1.86 4.47E-6
Click to View Chart Preview Click for Info SPCC569.05c Schizosaccharomyces pombe 1,829 uncertain 2.021 9.46E-9
Click to View Chart Preview Click for Info At3g20660 Arabidopsis thaliana 2,335 uncertain 0.238 0.053
Click to View Chart Preview Click for Info DTR1 [YBR180W] Saccharomyces cerevisiae 2,658 uncertain 0.091 0.079
Click to View Chart Preview Click for Info SPBC36.01c Schizosaccharomyces pombe 2,679 uncertain 3.328 8.19E-5
Click to View Chart Preview Click for Info SPBPB2B2.16c Schizosaccharomyces pombe 2,716 uncertain 2.334 3.6E-4
Click to View Chart Preview Click for Info SPBC36.02c Schizosaccharomyces pombe 2,739 uncertain 22.181 5.22E-7
Click to View Chart Preview Click for Info SPBC36.03c Schizosaccharomyces pombe 3,016 uncertain 2764.766 7.15E-12
Click to View Chart Preview Click for Info SPAC750.02c Schizosaccharomyces pombe 3,057 uncertain 11.879 1.35E-4
Click to View Chart Preview Click for Info SPBC947.06c Schizosaccharomyces pombe 3,060 uncertain 2.652 0.012
Click to View Chart Preview Click for Info SPAC11D3.05 Schizosaccharomyces pombe 3,091 uncertain 2.06 0.04
Click to View Chart Preview Click for Info SPAC17C9.16c Schizosaccharomyces pombe 3,136 uncertain 12.212 3.26E-4
Click to View Chart Preview Click for Info QDR2 [YIL121W] Saccharomyces cerevisiae 3,526 uncertain 0.276 0.418
Click to View Chart Preview Click for Info caf5 [SPBC609.04] Schizosaccharomyces pombe 3,617 uncertain 97.45 1.89E-4
Click to View Chart Preview Click for Info QDR1 [YIL120W] Saccharomyces cerevisiae 3,761 uncertain 0.822 0.272
Click to View Chart Preview Click for Info bsu1 [SPAC17A2.01] Schizosaccharomyces pombe 3,786 uncertain 53.469 0.015
Click to View Chart Preview Click for Info SPCC576.17c Schizosaccharomyces pombe 3,798 uncertain 420.123 4E-5
Click to View Chart Preview Click for Info SPCC794.04c Schizosaccharomyces pombe 3,962 uncertain 228.99 0.003
Click to View Chart Preview Click for Info SPBC530.02 Schizosaccharomyces pombe 4,373 uncertain 17909.457 1.23E-5
Click to View Chart Preview Click for Info SLC22A6 [ENSG00000197901] Homo sapiens 5,360 uncertain 0.018 1.252
Click to View Chart Preview Click for Info YHK8 [YHR048W] Saccharomyces cerevisiae 5,946 uncertain 96.85 2.914
Click to View Chart Preview Click for Info SLC22A14 [ENSG00000144671] Homo sapiens 7,082 uncertain 0.667 0.108
Click to View Chart Preview Click for Info SV2A [ENSG00000159164] Homo sapiens 7,457 uncertain 1.641 0.056
Click to View Chart Preview Click for Info TUBA1B [ENSG00000123416] Homo sapiens 7,777 uncertain 1.277 0.089
Click to View Chart Preview Click for Info SLC22A4 [ENSG00000197208] Homo sapiens 7,778 uncertain 1.277 0.089
Click to View Chart Preview Click for Info OAT5 [ENSG00000184999] Homo sapiens 9,409 uncertain 0.462 0.668
Click to View Chart Preview Click for Info SLC22A16 [ENSG00000004809] Homo sapiens 9,833 uncertain 1.283 0.305
Click to View Chart Preview Click for Info At1g16390 Arabidopsis thaliana 10,055 uncertain 2.672 0.067
Click to View Chart Preview Click for Info SLC22A15 [ENSG00000163393] Homo sapiens 11,070 uncertain 0.444 1.947
Click to View Chart Preview Click for Info SLC22A7 [ENSG00000137204] Homo sapiens 11,233 uncertain 0.948 1.019
Click to View Chart Preview Click for Info SLC22A11 [ENSG00000168065] Homo sapiens 11,341 uncertain 0.424 2.46
Click to View Chart Preview Click for Info SLC22A17 [ENSG00000092096] Homo sapiens 13,640 uncertain 3.827 1.892
Click to View Chart Preview Click for Info C6orf85 [ENSG00000137266] Homo sapiens 13,830 uncertain 25.225 0.394
Click to View Chart Preview Click for Info SLC22A1 [ENSG00000175003] Homo sapiens 13,976 uncertain 3.93 3.626
Click to View Chart Preview Click for Info YUP8H12R.2 [AT1G79360] Arabidopsis thaliana 18,752 uncertain 2.303 1.557
Click to View Chart Preview Click for Info At1g16370 Arabidopsis thaliana 19,139 uncertain 2.189 1.825
Click to View Chart Preview Click for Info At1g79410 Arabidopsis thaliana 19,535 uncertain 1.842 2.504

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

Click for more information

Graph of SPAPB1A11.01 (from probeset SPAPB1A11.01).

Click to enlarge