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Schizosaccharomyces pombe

Cyclebase periodic rank: 4,780



Gene Features:

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Degradation Signals:
  1. KENbox

Analysis Results

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Combined Analysis (all experiments)

P(per)
= 22885.5019
P(reg)
= 0.6649
Peaktime
uncertain [see possible reasons why]

Combined Peaktime

Peaktime Chart
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Experiments


Orthologs and Paralogs:

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Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info NAM8 [YHR086W] Saccharomyces cerevisiae 186 S/G2 5.92E-20 0.008
Periodic
Click to View Chart Preview Click for Info csx1 [SPAC17A2.09c] Schizosaccharomyces pombe 244 G2 2.91E-20 5.9E-4
Periodic
Click to View Chart Preview Click for Info SPBC23E6.01c Schizosaccharomyces pombe 281 S/G2 3.37E-16 7.13E-6
Periodic
Click to View Chart Preview Click for Info WHI3 [YNL197C] Saccharomyces cerevisiae 283 S 4.2E-12 1.43E-5
Periodic
Click to View Chart Preview Click for Info nrd1 [SPAC2F7.11] Schizosaccharomyces pombe 308 G2 6.52E-14 7.1E-7
Periodic
Click to View Chart Preview Click for Info At3g19130 Arabidopsis thaliana 420 uncertain 0.005 0.239
Click to View Chart Preview Click for Info nop12 [SPAC16E8.06c] Schizosaccharomyces pombe 437 G2 3.37E-13 3.89E-4
Periodic
Click to View Chart Preview Click for Info At5g61030 Arabidopsis thaliana 525 uncertain 0.036 0.009
Click to View Chart Preview Click for Info SPBC428.12c Schizosaccharomyces pombe 572 uncertain 1.02E-13 0.007
Click to View Chart Preview Click for Info SPAC328.05 Schizosaccharomyces pombe 586 uncertain 1.57E-9 5.05E-5
Click to View Chart Preview Click for Info At3g23830 Arabidopsis thaliana 817 uncertain 0.069 0.01
Click to View Chart Preview Click for Info MRPS35 [ENSG00000061794] Homo sapiens 1,134 uncertain 1.38E-5 2.434
Click to View Chart Preview Click for Info LARP7 [ENSG00000174720] Homo sapiens 1,135 uncertain 1.38E-5 2.434
Click to View Chart Preview Click for Info scl28 [AT5G18810] Arabidopsis thaliana 1,166 uncertain 0.008 1.028
Click to View Chart Preview Click for Info F14J22.16 [AT1G49600] Arabidopsis thaliana 1,400 uncertain 0.038 0.306
Click to View Chart Preview Click for Info scw1 [SPCC16C4.07] Schizosaccharomyces pombe 1,500 uncertain 2.37E-5 0.028
Click to View Chart Preview Click for Info At2g37510 Arabidopsis thaliana 1,551 uncertain 0.093 0.104
Click to View Chart Preview Click for Info RBP37 [AT4G10610] Arabidopsis thaliana 1,649 uncertain 0.018 0.994
Click to View Chart Preview Click for Info At3g15010 Arabidopsis thaliana 1,664 uncertain 0.032 0.517
Click to View Chart Preview Click for Info WHI4 [YDL224C] Saccharomyces cerevisiae 1,771 uncertain 0.002 0.17
Click to View Chart Preview Click for Info SPAC3H8.09c Schizosaccharomyces pombe 1,845 uncertain 0.006 0.025
Click to View Chart Preview Click for Info TIF3 [YPR163C] Saccharomyces cerevisiae 1,946 uncertain 0.003 0.176
Click to View Chart Preview Click for Info SPBC365.04c Schizosaccharomyces pombe 2,293 uncertain 0.067 0.055
Click to View Chart Preview Click for Info AT5g54900 Arabidopsis thaliana 2,316 uncertain 0.038 0.844
Click to View Chart Preview Click for Info cwf2 [SPAC3A12.11c] Schizosaccharomyces pombe 2,395 uncertain 0.002 0.343
Click to View Chart Preview Click for Info NAB3 [YPL190C] Saccharomyces cerevisiae 2,573 uncertain 0.072 0.075
Click to View Chart Preview Click for Info tcg1 [SPBC660.11] Schizosaccharomyces pombe 2,579 uncertain 0.742 0.003
Click to View Chart Preview Click for Info At1g32790 Arabidopsis thaliana 2,594 uncertain 0.023 1.855
Click to View Chart Preview Click for Info HNRPDL [ENSG00000152795] Homo sapiens 2,634 uncertain 0.046 0.032
Click to View Chart Preview Click for Info At5g55670 Arabidopsis thaliana 2,675 uncertain 0.041 1.021
Click to View Chart Preview Click for Info HNRPC [ENSG00000092199] Homo sapiens 2,694 uncertain 0.012 0.132
Click to View Chart Preview Click for Info sce3 [SPBC18H10.04c] Schizosaccharomyces pombe 2,756 uncertain 0.085 0.434
Click to View Chart Preview Click for Info crp79 [SPAC1610.03c] Schizosaccharomyces pombe 3,030 uncertain 11.525 1.09E-4
Click to View Chart Preview Click for Info PUB1 [YNL016W] Saccharomyces cerevisiae 3,061 uncertain 0.134 0.223
Click to View Chart Preview Click for Info RBP29 [AT3G53460] Arabidopsis thaliana 3,122 uncertain 0.047 1.211
Click to View Chart Preview Click for Info NOP12 [YOL041C] Saccharomyces cerevisiae 3,247 uncertain 5.472 0.01
Click to View Chart Preview Click for Info NAB6 [YML117W] Saccharomyces cerevisiae 3,287 uncertain 0.088 0.652
Click to View Chart Preview Click for Info HNRPA2B1 [ENSG00000122566] Homo sapiens 3,309 uncertain 0.006 0.621
Click to View Chart Preview Click for Info T8M16_190 [AT3G56860] Arabidopsis thaliana 3,429 uncertain 0.036 1.931
Click to View Chart Preview Click for Info mde7 [SPCC320.07c] Schizosaccharomyces pombe 3,523 uncertain 42.207 8.17E-4
Click to View Chart Preview Click for Info MRN1 [YPL184C] Saccharomyces cerevisiae 3,593 uncertain 0.183 0.772
Click to View Chart Preview Click for Info F22O6_240 [AT3G52380] Arabidopsis thaliana 3,608 uncertain 0.043 1.768
Click to View Chart Preview Click for Info F10M23.340 [AT4G27000] Arabidopsis thaliana 3,654 uncertain 0.033 2.484
Click to View Chart Preview Click for Info SPBC1289.12 Schizosaccharomyces pombe 3,759 uncertain 2.712 7.513
Click to View Chart Preview Click for Info mug24 [SPCC74.09] Schizosaccharomyces pombe 3,819 uncertain 260.921 2.23E-4
Click to View Chart Preview Click for Info GBP2 [YCL011C] Saccharomyces cerevisiae 3,856 uncertain 0.341 0.856
Click to View Chart Preview Click for Info At1g60000 Arabidopsis thaliana 3,936 uncertain 0.192 0.344
Click to View Chart Preview Click for Info LHP1 [YDL051W] Saccharomyces cerevisiae 4,097 uncertain 28.07 0.02
Click to View Chart Preview Click for Info MUD1 [YBR119W] Saccharomyces cerevisiae 4,099 uncertain 0.245 2.332
Click to View Chart Preview Click for Info sla1 [SPAC57A10.10c] Schizosaccharomyces pombe 4,445 uncertain 18034.484 6.13E-5
Click to View Chart Preview Click for Info SPBC13G1.14c Schizosaccharomyces pombe 4,632 uncertain 2697.912 1.75
Click to View Chart Preview Click for Info TRA2A [ENSG00000164548] Homo sapiens 4,788 uncertain 0.004 3.215
Click to View Chart Preview Click for Info HRB1 [YNL004W] Saccharomyces cerevisiae 4,887 uncertain 14.56 0.369
Click to View Chart Preview Click for Info NGR1 [YBR212W] Saccharomyces cerevisiae 5,024 uncertain 3.085 2.542
Click to View Chart Preview Click for Info CWC2 [YDL209C] Saccharomyces cerevisiae 5,470 uncertain 23 1.315
Click to View Chart Preview Click for Info TRSPAP1 [ENSG00000180098] Homo sapiens 5,850 uncertain 0.136 0.233
Click to View Chart Preview Click for Info At2g21690 Arabidopsis thaliana 5,855 uncertain 2.099 0.001
Click to View Chart Preview Click for Info At5g19960 Arabidopsis thaliana 6,026 uncertain 0.08 2.201
Click to View Chart Preview Click for Info At1g11650 Arabidopsis thaliana 6,032 uncertain 0.077 2.312
Click to View Chart Preview Click for Info SRRP35 [ENSG00000154548] Homo sapiens 6,305 uncertain 1.474 0.029
Click to View Chart Preview Click for Info TRA2B [ENSG00000136527] Homo sapiens 6,394 uncertain 0.318 0.145
Click to View Chart Preview Click for Info GRP7 [AT2G21660] Arabidopsis thaliana 6,549 uncertain 0.192 0.919
Click to View Chart Preview Click for Info RALY [ENSG00000125970] Homo sapiens 6,663 uncertain 0.299 0.185
Click to View Chart Preview Click for Info RBM34 [ENSG00000188739] Homo sapiens 6,743 uncertain 0.025 2.327
Click to View Chart Preview Click for Info EIF4B [ENSG00000063046] Homo sapiens 6,825 uncertain 0.29 0.214
Click to View Chart Preview Click for Info At2g27330 Arabidopsis thaliana 7,204 uncertain 0.139 1.63
Click to View Chart Preview Click for Info AT5g06210 Arabidopsis thaliana 7,457 uncertain 0.108 2.362
Click to View Chart Preview Click for Info At1g17370 Arabidopsis thaliana 8,715 uncertain 0.155 2.212
Click to View Chart Preview Click for Info F12G12.4 [AT1G34140] Arabidopsis thaliana 8,765 uncertain 0.39 0.737
Click to View Chart Preview Click for Info At3g10400 Arabidopsis thaliana 9,131 uncertain 0.152 2.56
Click to View Chart Preview Click for Info F18A5.250 [AT4G13860] Arabidopsis thaliana 9,425 uncertain 2.926 0.028
Click to View Chart Preview Click for Info At2g24350 Arabidopsis thaliana 9,679 uncertain 1.062 0.277
Click to View Chart Preview Click for Info At3g14100 Arabidopsis thaliana 9,726 uncertain 0.176 2.534
Click to View Chart Preview Click for Info At1g18630 Arabidopsis thaliana 9,783 uncertain 0.31 1.31
Click to View Chart Preview Click for Info F4D11.80 [AT4G32720] Arabidopsis thaliana 10,032 uncertain 0.656 0.565
Click to View Chart Preview Click for Info At3g08000 Arabidopsis thaliana 10,051 uncertain 2.455 0.082
Click to View Chart Preview Click for Info EIF4H [ENSG00000106682] Homo sapiens 10,199 uncertain 0.214 2.294
Click to View Chart Preview Click for Info At5g40490 Arabidopsis thaliana 10,241 uncertain 0.511 0.826
Click to View Chart Preview Click for Info AT4g12630 [AT4G12640] Arabidopsis thaliana 10,429 uncertain 0.211 2.55
Click to View Chart Preview Click for Info At3g14450 Arabidopsis thaliana 10,439 uncertain 1.059 0.358
Click to View Chart Preview Click for Info F4F15.260 [AT3G52150] Arabidopsis thaliana 10,451 uncertain 0.598 0.73
Click to View Chart Preview Click for Info At1g73530 Arabidopsis thaliana 10,846 uncertain 0.248 2.375
Click to View Chart Preview Click for Info SR45 [AT1G16610] Arabidopsis thaliana 11,043 uncertain 0.486 1.121
Click to View Chart Preview Click for Info ZCRB1 [ENSG00000139168] Homo sapiens 11,107 uncertain 0.654 1.36
Click to View Chart Preview Click for Info At5g46840 Arabidopsis thaliana 11,125 uncertain 0.452 1.258
Click to View Chart Preview Click for Info ENSG00000206228 Homo sapiens 11,129 uncertain 0.233 3.859
Click to View Chart Preview Click for Info At5g24440 Arabidopsis thaliana 11,297 uncertain 2.276 0.17
Click to View Chart Preview Click for Info RALYL [ENSG00000184672] Homo sapiens 11,451 uncertain 1.328 0.838
Click to View Chart Preview Click for Info GRP8 [AT4G39260] Arabidopsis thaliana 11,851 uncertain 0.833 0.755
Click to View Chart Preview Click for Info At5g54580 Arabidopsis thaliana 11,966 uncertain 1.514 0.374
Click to View Chart Preview Click for Info At4g09040 Arabidopsis thaliana 12,374 uncertain 0.384 2.269
Click to View Chart Preview Click for Info HNRPAB [ENSG00000197451] Homo sapiens 12,663 uncertain 0.479 5.354
Click to View Chart Preview Click for Info F19K16.16 [AT1G79880] Arabidopsis thaliana 12,773 uncertain 0.396 2.451
Click to View Chart Preview Click for Info AT1g17640 Arabidopsis thaliana 13,077 uncertain 2.201 0.33
Click to View Chart Preview Click for Info At2g22100 Arabidopsis thaliana 13,127 uncertain 1.015 0.876
Click to View Chart Preview Click for Info At1g54080 Arabidopsis thaliana 13,324 uncertain 0.498 2.184
Click to View Chart Preview Click for Info scl30 [AT3G55460] Arabidopsis thaliana 13,618 uncertain 0.477 2.523
Click to View Chart Preview Click for Info At5g50250 Arabidopsis thaliana 13,711 uncertain 0.545 2.218
Click to View Chart Preview Click for Info GRP2 [AT4G13850] Arabidopsis thaliana 14,312 uncertain 1.616 0.715
Click to View Chart Preview Click for Info At1g01080 Arabidopsis thaliana 14,523 uncertain 0.601 2.492
Click to View Chart Preview Click for Info At2g37220 Arabidopsis thaliana 14,633 uncertain 1.04 1.331
Click to View Chart Preview Click for Info At1g53650 Arabidopsis thaliana 14,713 uncertain 0.672 2.314
Click to View Chart Preview Click for Info AT2g35410 Arabidopsis thaliana 15,672 uncertain 0.969 1.948
Click to View Chart Preview Click for Info At5g04280 Arabidopsis thaliana 15,959 uncertain 0.972 2.087
Click to View Chart Preview Click for Info At5g19350 Arabidopsis thaliana 16,244 uncertain 0.882 2.501
Click to View Chart Preview Click for Info rnp-D [AT4G24770] Arabidopsis thaliana 17,025 uncertain 1.672 1.439
Click to View Chart Preview Click for Info At3g52155 Arabidopsis thaliana 17,572 uncertain 2.142 1.247
Click to View Chart Preview Click for Info scl33 [AT1G55310] Arabidopsis thaliana 18,102 uncertain 1.483 2.226
Click to View Chart Preview Click for Info F2K15.250 [AT3G49390] Arabidopsis thaliana 18,124 uncertain 1.678 1.928
Click to View Chart Preview Click for Info At3g20930 Arabidopsis thaliana 18,131 uncertain 1.811 1.765
Click to View Chart Preview Click for Info XF41 [AT1G58470] Arabidopsis thaliana 18,162 uncertain 1.836 1.75
Click to View Chart Preview Click for Info At5g19030 Arabidopsis thaliana 18,296 uncertain 1.492 2.335
Click to View Chart Preview Click for Info At1g74230 Arabidopsis thaliana 18,362 uncertain 1.687 2.051
Click to View Chart Preview Click for Info uba1a [AT2G22090] Arabidopsis thaliana 18,369 uncertain 1.489 2.388
Click to View Chart Preview Click for Info At1g60650 Arabidopsis thaliana 18,685 uncertain 2.294 1.537
Click to View Chart Preview Click for Info scl30a [AT3G13570] Arabidopsis thaliana 18,884 uncertain 1.793 2.176
Click to View Chart Preview Click for Info At2g42240 Arabidopsis thaliana 19,311 uncertain 2.019 2.106
Click to View Chart Preview Click for Info AT4g20030 Arabidopsis thaliana 19,563 uncertain 2.152 2.097
Click to View Chart Preview Click for Info At2g41060 Arabidopsis thaliana 19,695 uncertain 2.365 1.954
Click to View Chart Preview Click for Info At4g36960 Arabidopsis thaliana 20,479 uncertain 2.913 2.003
Click to View Chart Preview Click for Info F3F19.21 [AT1G13190] Arabidopsis thaliana 20,580 uncertain 3.071 1.971

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

Click for more information

Graph of mug28 (from probeset SPAC343.07).

Click to enlarge