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Schizosaccharomyces pombe

Cyclebase periodic rank: 942



Gene Features:

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Degradation Signals:
  1. PEST

Analysis Results

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Combined Analysis (all experiments)

P(per)
= 4.429E-5
P(reg)
= 1.494E-4
Peaktime
uncertain [see possible reasons why]

Combined Peaktime

Peaktime Chart
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Experiments


Orthologs and Paralogs:

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Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info vht1 [SPAC1B3.16c] Schizosaccharomyces pombe 247 G2 9.73E-6 3.41E-18
Periodic
Click to View Chart Preview Click for Info VHT1 [YGR065C] Saccharomyces cerevisiae 515 M 6.42E-9 0.003
Periodic
Click to View Chart Preview Click for Info SPCPB1C11.03 Schizosaccharomyces pombe 811 uncertain 0.003 1.08E-8
Click to View Chart Preview Click for Info SPBPB10D8.01 Schizosaccharomyces pombe 882 uncertain 8.34E-5 1.86E-5
Click to View Chart Preview Click for Info SPBC1683.12 Schizosaccharomyces pombe 1,215 uncertain 1.7E-5 0.006
Click to View Chart Preview Click for Info SPCC417.10 Schizosaccharomyces pombe 1,272 uncertain 8.17E-6 0.011
Click to View Chart Preview Click for Info SEO1 [YAL067C] Saccharomyces cerevisiae 1,324 uncertain 0.421 1.66E-6
Click to View Chart Preview Click for Info TNA1 [YGR260W] Saccharomyces cerevisiae 1,516 uncertain 1.81E-6 0.944
Click to View Chart Preview Click for Info SPAC1002.16c Schizosaccharomyces pombe 1,538 uncertain 0.012 5.19E-4
Click to View Chart Preview Click for Info SPBC1773.15 Schizosaccharomyces pombe 1,759 uncertain 0.005 0.017
Click to View Chart Preview Click for Info liz1 [SPBC2G2.01c] Schizosaccharomyces pombe 1,975 uncertain 0.283 2.46E-5
Click to View Chart Preview Click for Info YIL166C Saccharomyces cerevisiae 2,436 uncertain 0.01 0.337
Click to View Chart Preview Click for Info YOL162W Saccharomyces cerevisiae 3,090 uncertain 17.14 0.002
Click to View Chart Preview Click for Info SPCC757.13 Schizosaccharomyces pombe 3,124 uncertain 2.817 0.023
Click to View Chart Preview Click for Info SPAC1039.04 Schizosaccharomyces pombe 3,733 uncertain 17.847 0.159
Click to View Chart Preview Click for Info YOL163W Saccharomyces cerevisiae 4,083 uncertain 3.609 0.152
Click to View Chart Preview Click for Info YCT1 [YLL055W] Saccharomyces cerevisiae 4,320 uncertain 2.337 0.43
Click to View Chart Preview Click for Info THI73 [YLR004C] Saccharomyces cerevisiae 4,377 uncertain 25.45 0.049
Click to View Chart Preview Click for Info SPAC11D3.18c Schizosaccharomyces pombe 4,389 uncertain 99238.46 9.77E-8
Click to View Chart Preview Click for Info DAL5 [YJR152W] Saccharomyces cerevisiae 5,836 uncertain 328.2 0.428
Click to View Chart Preview Click for Info SLC37A3 [ENSG00000157800] Homo sapiens 6,054 uncertain 0.054 0.681
Click to View Chart Preview Click for Info FEN2 [YCR028C] Saccharomyces cerevisiae 6,099 uncertain 1252 1.584
Click to View Chart Preview Click for Info At1g30560 Arabidopsis thaliana 7,547 uncertain 3.043 0.002
Click to View Chart Preview Click for Info G6PT3 [ENSG00000137700] Homo sapiens 7,819 uncertain 0.034 3.402
Click to View Chart Preview Click for Info SLC37A2 [ENSG00000134955] Homo sapiens 9,672 uncertain 2.744 0.13
Click to View Chart Preview Click for Info At2g13100 Arabidopsis thaliana 12,483 uncertain 0.632 1.283
Click to View Chart Preview Click for Info AT4g25220 Arabidopsis thaliana 12,495 uncertain 2.529 0.227
Click to View Chart Preview Click for Info T21L8.170 [AT3G47420] Arabidopsis thaliana 13,928 uncertain 2.226 0.43
Click to View Chart Preview Click for Info dl4810c [AT4G17550] Arabidopsis thaliana 16,187 uncertain 1.539 1.265

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

Click for more information

Graph of SPAC1B3.15c (from probeset SPAC1B3.15c).

Click to enlarge