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Schizosaccharomyces pombe

Cyclebase periodic rank: 300

Periodic


Gene Features:

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Degradation Signals:
  1. PEST

Analysis Results

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Combined Analysis (all experiments)

P(per)
= 1.163E-16
P(reg)
= 2.136E-4
Peaktime
= G2 (56%)

Combined Peaktime

Peaktime Chart
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Experiments


Orthologs and Paralogs:

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Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info SRO9 [YCL037C] Saccharomyces cerevisiae 2,074 uncertain 0.818 7.87E-4
Click to View Chart Preview Click for Info SLF1 [YDR515W] Saccharomyces cerevisiae 3,487 uncertain 9.874 0.01
Click to View Chart Preview Click for Info At5g66100 Arabidopsis thaliana 6,004 uncertain 0.935 0.079
Click to View Chart Preview Click for Info LARP2 [ENSG00000138709] Homo sapiens 13,813 uncertain 3.527 2.658
Click to View Chart Preview Click for Info T19K4.20 [AT4G35890] Arabidopsis thaliana 16,861 uncertain 1.08 2.324
Click to View Chart Preview Click for Info At5g21160 Arabidopsis thaliana 17,036 uncertain 1.282 1.99

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

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Graph of SPAC1527.03 (from probeset SPAC1527.03).

Click to enlarge