Cyclebase.org

Search Type:
  • Gene Name
  • BLAST
Example searches:

 

Homo sapiens

Cyclebase periodic rank: 2,832



Gene Features:

[hide] [show]
Degradation Signals:
  1. Dbox

Analysis Results

[hide] [show]

Combined Analysis (all experiments)

P(per)
= 0.0024
P(reg)
= 0.8132
Peaktime
uncertain [see possible reasons why]

Combined Peaktime

Peaktime Chart
Loading Image
Error Loading Image!

Experiments


Orthologs and Paralogs:

[hide] [show]
Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info TRIM26 [ENSG00000137313] Homo sapiens 786 uncertain 1.01E-6 4.89
Click to View Chart Preview Click for Info ENSG00000206499 Homo sapiens 787 uncertain 1.01E-6 4.89
Click to View Chart Preview Click for Info MID1 [ENSG00000101871] Homo sapiens 1,260 uncertain 0.002 0.036
Click to View Chart Preview Click for Info SPCC548.05c Schizosaccharomyces pombe 1,362 uncertain 1.1E-8 0.174
Click to View Chart Preview Click for Info IMAGE:1844868 [ENSG00000205044] Homo sapiens 2,015 uncertain 0.012 0.042
Click to View Chart Preview Click for Info RNF186 [ENSG00000178828] Homo sapiens 2,093 uncertain 0.837 7.18E-4
Click to View Chart Preview Click for Info TRIM11 [ENSG00000154370] Homo sapiens 2,250 uncertain 3.19E-4 2.468
Click to View Chart Preview Click for Info IFT80 [ENSG00000068885] Homo sapiens 3,250 uncertain 0.008 0.397
Click to View Chart Preview Click for Info SYTL2 [ENSG00000137501] Homo sapiens 3,596 uncertain 0.002 2.191
Click to View Chart Preview Click for Info NHLRC3 [ENSG00000188811] Homo sapiens 3,597 uncertain 0.002 2.191
Click to View Chart Preview Click for Info MUL [ENSG00000108395] Homo sapiens 3,625 uncertain 0.002 2.353
Click to View Chart Preview Click for Info PSH1 [YOL054W] Saccharomyces cerevisiae 4,609 uncertain 1.641 1.416
Click to View Chart Preview Click for Info TRIM10 [ENSG00000137394] Homo sapiens 4,882 uncertain 0.194 0.079
Click to View Chart Preview Click for Info TRIM10 [ENSG00000204613] Homo sapiens 4,883 uncertain 0.194 0.079
Click to View Chart Preview Click for Info TRIM10 [ENSG00000206424] Homo sapiens 4,884 uncertain 0.194 0.079
Click to View Chart Preview Click for Info TRIM15 [ENSG00000204610] Homo sapiens 4,990 uncertain 2.558 0.007
Click to View Chart Preview Click for Info TRIM68 [ENSG00000167333] Homo sapiens 5,422 uncertain 0.119 0.195
Click to View Chart Preview Click for Info RUNDC1 [ENSG00000198863] Homo sapiens 5,423 uncertain 0.119 0.195
Click to View Chart Preview Click for Info RNF135 [ENSG00000181481] Homo sapiens 5,507 uncertain 0.022 1.096
Click to View Chart Preview Click for Info TRIM2 [ENSG00000109654] Homo sapiens 5,746 uncertain 0.802 0.037
Click to View Chart Preview Click for Info TRIM5 [ENSG00000132256] Homo sapiens 5,875 uncertain 0.058 0.56
Click to View Chart Preview Click for Info TRIM25 [ENSG00000121060] Homo sapiens 5,932 uncertain 0.475 0.071
Click to View Chart Preview Click for Info TRIM32 [ENSG00000119401] Homo sapiens 5,947 uncertain 0.037 0.928
Click to View Chart Preview Click for Info CMYA5 [ENSG00000164309] Homo sapiens 6,173 uncertain 0.039 1.002
Click to View Chart Preview Click for Info F13N6.21 [AT1G56500] Arabidopsis thaliana 6,308 uncertain 0.087 2.211
Click to View Chart Preview Click for Info RFPL2 [ENSG00000128253] Homo sapiens 6,470 uncertain 0.774 0.063
Click to View Chart Preview Click for Info SP140 [ENSG00000079263] Homo sapiens 6,808 uncertain 0.011 5.386
Click to View Chart Preview Click for Info TRIM41 [ENSG00000146063] Homo sapiens 7,180 uncertain 0.077 1.002
Click to View Chart Preview Click for Info TRIM64 [ENSG00000189253] Homo sapiens 7,611 uncertain 0.254 0.405
Click to View Chart Preview Click for Info ENSG00000204450 Homo sapiens 7,612 uncertain 0.254 0.405
Click to View Chart Preview Click for Info SP110 [ENSG00000135899] Homo sapiens 8,271 uncertain 2.094 0.074
Click to View Chart Preview Click for Info RNF39 [ENSG00000204618] Homo sapiens 8,301 uncertain 0.526 0.303
Click to View Chart Preview Click for Info TRIM6 [ENSG00000121236] Homo sapiens 10,064 uncertain 0.721 0.627
Click to View Chart Preview Click for Info TRIM42 [ENSG00000155890] Homo sapiens 10,288 uncertain 0.194 2.662
Click to View Chart Preview Click for Info INTS9 [ENSG00000104299] Homo sapiens 10,603 uncertain 0.199 3.219
Click to View Chart Preview Click for Info TRIM54 [ENSG00000138100] Homo sapiens 10,604 uncertain 0.199 3.219
Click to View Chart Preview Click for Info ACSS1 [ENSG00000154930] Homo sapiens 10,745 uncertain 0.512 1.35
Click to View Chart Preview Click for Info RNF208 [ENSG00000196435] Homo sapiens 10,814 uncertain 0.417 1.746
Click to View Chart Preview Click for Info SPRYD4 [ENSG00000176422] Homo sapiens 10,933 uncertain 0.359 2.189
Click to View Chart Preview Click for Info RNF183 [ENSG00000165188] Homo sapiens 11,206 uncertain 0.394 2.401
Click to View Chart Preview Click for Info FSD1L [ENSG00000106701] Homo sapiens 11,558 uncertain 0.438 2.695
Click to View Chart Preview Click for Info TRIM7 [ENSG00000146054] Homo sapiens 11,596 uncertain 0.546 2.23
Click to View Chart Preview Click for Info TRIM22 [ENSG00000132274] Homo sapiens 11,776 uncertain 0.242 5.636
Click to View Chart Preview Click for Info TRIM38 [ENSG00000112343] Homo sapiens 11,950 uncertain 0.397 3.848
Click to View Chart Preview Click for Info SH3RF2 [ENSG00000156463] Homo sapiens 11,964 uncertain 1.274 1.206
Click to View Chart Preview Click for Info TRIM28 [ENSG00000130726] Homo sapiens 12,093 uncertain 0.38 4.354
Click to View Chart Preview Click for Info BERP [ENSG00000110171] Homo sapiens 12,293 uncertain 0.849 2.27
Click to View Chart Preview Click for Info TRIM74 [ENSG00000155428] Homo sapiens 12,520 uncertain 1.414 1.619
Click to View Chart Preview Click for Info TRIM31 [ENSG00000137397] Homo sapiens 12,972 uncertain 1.489 2.327
Click to View Chart Preview Click for Info SP100 [ENSG00000067066] Homo sapiens 13,239 uncertain 3.726 1.239
Click to View Chart Preview Click for Info TRIM65 [ENSG00000141569] Homo sapiens 13,258 uncertain 2.428 1.931
Click to View Chart Preview Click for Info TRIM50 [ENSG00000146755] Homo sapiens 13,281 uncertain 2.631 1.825
Click to View Chart Preview Click for Info TRIM46 [ENSG00000163462] Homo sapiens 13,380 uncertain 2.752 1.917
Click to View Chart Preview Click for Info MEFV [ENSG00000103313] Homo sapiens 13,441 uncertain 7.551 0.761
Click to View Chart Preview Click for Info C13orf34 [ENSG00000196070] Homo sapiens 13,442 uncertain 7.551 0.761
Click to View Chart Preview Click for Info RO52 [ENSG00000132109] Homo sapiens 13,542 uncertain 1.772 3.582
Click to View Chart Preview Click for Info TRIM62 [ENSG00000116525] Homo sapiens 13,850 uncertain 4.085 2.509
Click to View Chart Preview Click for Info TRIM39 [ENSG00000204599] Homo sapiens 13,897 uncertain 5.257 2.169
Click to View Chart Preview Click for Info TRIM39 [ENSG00000206419] Homo sapiens 13,898 uncertain 5.257 2.169
Click to View Chart Preview Click for Info TRIM39 [ENSG00000206495] Homo sapiens 13,899 uncertain 5.257 2.169

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

Click for more information

Graph of FSD2 (from probeset IMAGE:126884).

Click to enlarge